Analysis of interatomic Contacts of Structural Units in PDB entry:
5A3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A3V entry

There are 2 chains in PDB entry 5A3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4PRO 329
B
 GLY 3PRO 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5A3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 21Right-handed 310
Helix 2
2
A
46 55Right-handed alpha
Helix 3
3
A
98 101Right-handed 310
Helix 4
4
A
124 130Right-handed alpha
Helix 5
5
A
131 144Right-handed alpha
Helix 6
6
A
166 179Right-handed alpha
Helix 7
7
A
188 190Right-handed 310
Helix 8
8
A
191 198Right-handed alpha
Helix 9
9
A
208 214Right-handed alpha
Helix 10
10
A
233 238Right-handed alpha
Helix 11
11
A
253 267Right-handed alpha
Helix 12
12
A
280 293Right-handed alpha
Helix 13
13
A
308 319Right-handed alpha
Helix 14
14
B
17 21Right-handed 310
Helix 15
15
B
46 55Right-handed alpha
Helix 16
16
B
98 101Right-handed 310
Helix 17
17
B
124 130Right-handed alpha
Helix 18
18
B
131 144Right-handed alpha
Helix 19
19
B
166 179Right-handed alpha
Helix 20
20
B
188 190Right-handed 310
Helix 21
21
B
191 198Right-handed alpha
Helix 22
22
B
208 214Right-handed alpha
Helix 23
23
B
233 238Right-handed alpha
Helix 24
24
B
253 267Right-handed alpha
Helix 25
25
B
280 293Right-handed alpha
Helix 26
26
B
308 319Right-handed alpha
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There are 10 sheets in PDB entry 5A3V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
22 27anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 112first strand
Strand 2
A
35 44anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
92 96anti-parallel
Strand 3
A
72 80anti-parallel
Strand 4
A
35 44anti-parallel
Strand 5
A
324 328anti-parallel
Strand 6
A
300 305parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
92 96anti-parallel
Strand 3
A
72 80anti-parallel
Strand 4
A
35 44anti-parallel
Strand 5
A
108 112anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
182 187parallel
Strand 3
A
158 162parallel
Strand 4
A
222 227parallel
Strand 5
A
241 250parallel
Strand 6
A
271 275parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
22 27anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 112first strand
Strand 2
B
35 44anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
92 96anti-parallel
Strand 3
B
72 80anti-parallel
Strand 4
B
35 44anti-parallel
Strand 5
B
324 328anti-parallel
Strand 6
B
300 305parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
92 96anti-parallel
Strand 3
B
72 80anti-parallel
Strand 4
B
35 44anti-parallel
Strand 5
B
108 112anti-parallel
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There are 6 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 205first strand
Strand 2
B
182 187parallel
Strand 3
B
158 162parallel
Strand 4
B
222 227parallel
Strand 5
B
241 250parallel
Strand 6
B
271 275parallel
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