Analysis of interatomic Contacts of Structural Units in PDB entry:
5A42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A42 entry

There is 1 chain in PDB entry 5A42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 57PRO 1653
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5A42. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 63Right-handed alpha
Helix 2
2
A
96 100Right-handed alpha
Helix 3
3
A
180 184Right-handed 310
Helix 4
4
A
206 218Right-handed alpha
Helix 5
5
A
225 230Right-handed alpha
Helix 6
6
A
259 264Right-handed 310
Helix 7
7
A
854 857Right-handed 310
Helix 8
8
A
901 908Right-handed alpha
Helix 9
9
A
913 920Right-handed alpha
Helix 10
10
A
952 957Right-handed alpha
Helix 11
11
A
1147 1152Right-handed 310
Helix 12
12
A
1172 1183Right-handed alpha
Helix 13
13
A
1187 1201Right-handed alpha
Helix 14
14
A
1202 1209Right-handed alpha
Helix 15
15
A
1215 1233Right-handed alpha
Helix 16
16
A
1250 1267Right-handed alpha
Helix 17
17
A
1272 1289Right-handed alpha
Helix 18
18
A
1290 1293Right-handed 310
Helix 19
19
A
1300 1319Right-handed alpha
Helix 20
20
A
1323 1333Right-handed alpha
Helix 21
21
A
1334 1337Right-handed 310
Helix 22
22
A
1339 1353Right-handed alpha
Helix 23
23
A
1355 1367Right-handed alpha
Helix 24
24
A
1384 1399Right-handed alpha
Helix 25
25
A
1402 1418Right-handed alpha
Helix 26
26
A
1424 1438Right-handed alpha
Helix 27
27
A
1468 1473Right-handed alpha
Helix 28
28
A
1561 1565Right-handed 310
Helix 29
29
A
1576 1586Right-handed alpha
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There are 30 sheets in PDB entry 5A42. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, A0, A1, A2, A3,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 75first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
123 127anti-parallel
Strand 4
A
116 117anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
134 139anti-parallel
Strand 4
A
155 160anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 254first strand
Strand 2
A
185 190anti-parallel
Strand 3
A
167 170anti-parallel
Strand 4
A
279 280parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
284 289parallel
Strand 3
A
266 272anti-parallel
Strand 4
A
194 202anti-parallel
Strand 5
A
232 241anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
302 308anti-parallel
Strand 3
A
293 299anti-parallel
Strand 4
A
927 930anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 335first strand
Strand 2
A
320 324anti-parallel
Strand 3
A
352 357anti-parallel
Strand 4
A
360 365anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 391first strand
Strand 2
A
402 410anti-parallel
Strand 3
A
446 451anti-parallel
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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
476 479parallel
Strand 3
A
459 466anti-parallel
Strand 4
A
422 427anti-parallel
Strand 5
A
433 439anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 492first strand
Strand 2
A
504 512anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 517first strand
Strand 2
A
504 512parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 573first strand
Strand 2
A
504 512anti-parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 562first strand
Strand 2
A
522 531anti-parallel
Strand 3
A
584 593anti-parallel
Strand 4
A
599 602anti-parallel
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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 562first strand
Strand 2
A
522 531anti-parallel
Strand 3
A
584 593anti-parallel
Strand 4
A
607 608anti-parallel
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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 602first strand
Strand 2
A
584 593anti-parallel
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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 544first strand
Strand 2
A
616 618anti-parallel
Strand 3
A
645 651anti-parallel
Strand 4
A
710 715anti-parallel
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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 702first strand
Strand 2
A
665 679anti-parallel
Strand 3
A
720 726anti-parallel
Strand 4
A
732 738anti-parallel
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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 774first strand
Strand 2
A
811 813anti-parallel
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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
784 790first strand
Strand 2
A
824 830anti-parallel
Strand 3
A
843 849anti-parallel
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There are 5 strands in AS sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
868 869first strand
Strand 2
A
1008 1017parallel
Strand 3
A
994 1003anti-parallel
Strand 4
A
893 900anti-parallel
Strand 5
A
969 971anti-parallel
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There are 5 strands in AT sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
868 869first strand
Strand 2
A
1008 1017parallel
Strand 3
A
994 1003anti-parallel
Strand 4
A
893 900anti-parallel
Strand 5
A
975 976anti-parallel
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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
969 971first strand
Strand 2
A
893 900anti-parallel
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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
874 880first strand
Strand 2
A
982 988anti-parallel
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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1022 1026first strand
Strand 2
A
1036 1044anti-parallel
Strand 3
A
1080 1089anti-parallel
Strand 4
A
1063 1065anti-parallel
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There are 4 strands in AX sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1030 1031first strand
Strand 2
A
1117 1123parallel
Strand 3
A
1094 1100anti-parallel
Strand 4
A
1058 1061anti-parallel
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There are 3 strands in AY sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1072 1075first strand
Strand 2
A
1051 1055anti-parallel
Strand 3
A
1102 1103anti-parallel
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There are 4 strands in AZ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1130 1138first strand
Strand 2
A
1484 1492anti-parallel
Strand 3
A
1160 1166anti-parallel
Strand 4
A
1462 1467anti-parallel
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There are 4 strands in A0 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1143 1145first strand
Strand 2
A
1475 1477anti-parallel
Strand 3
A
1445 1449anti-parallel
Strand 4
A
1456 1458anti-parallel
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There are 6 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1501 1503first strand
Strand 2
A
1640 1642anti-parallel
Strand 3
A
1630 1633anti-parallel
Strand 4
A
1542 1550anti-parallel
Strand 5
A
1597 1604anti-parallel
Strand 6
A
1588 1593anti-parallel
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There are 4 strands in A2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1505 1512first strand
Strand 2
A
1529 1538anti-parallel
Strand 3
A
1610 1618anti-parallel
Strand 4
A
1555 1557anti-parallel
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There are 3 strands in A3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1524 1525first strand
Strand 2
A
1648 1652parallel
Strand 3
A
1622 1625anti-parallel
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