Analysis of interatomic Contacts of Structural Units in PDB entry:
5A49


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A49 entry

There are 10 chains in PDB entry 5A49 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 148SER 222
B
 ILE 147LYS 220
C
 ASN 145ALA 221
D
 SER 158LYS 220
E
 VAL 149SER 222
F
 ILE 147ALA 221
G
 ILE 147LEU 219
H
 ILE 147SER 222
I
 SER 148SER 222
J
 TYR 146ALA 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5A49. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
148 153Right-handed alpha
Helix 2
2
A
155 168Right-handed alpha
Helix 3
3
A
173 186Right-handed alpha
Helix 4
4
A
194 200Right-handed alpha
Helix 5
5
B
148 153Right-handed alpha
Helix 6
6
B
155 167Right-handed alpha
Helix 7
7
B
173 186Right-handed alpha
Helix 8
8
B
194 200Right-handed alpha
Helix 9
9
C
146 153Right-handed alpha
Helix 10
10
C
155 167Right-handed alpha
Helix 11
11
C
173 186Right-handed alpha
Helix 12
12
C
194 200Right-handed alpha
Helix 13
13
D
160 167Right-handed alpha
Helix 14
14
D
174 181Right-handed alpha
Helix 15
15
D
194 200Right-handed alpha
Helix 16
16
E
155 168Right-handed alpha
Helix 17
17
E
173 186Right-handed alpha
Helix 18
18
E
194 200Right-handed alpha
Helix 19
19
F
148 153Right-handed alpha
Helix 20
20
F
155 167Right-handed alpha
Helix 21
21
F
173 186Right-handed alpha
Helix 22
22
F
194 200Right-handed alpha
Helix 23
23
G
148 153Right-handed alpha
Helix 24
24
G
155 166Right-handed alpha
Helix 25
25
G
173 186Right-handed alpha
Helix 26
26
G
194 200Right-handed alpha
Helix 27
27
H
148 153Right-handed alpha
Helix 28
28
H
155 167Right-handed alpha
Helix 29
29
H
173 186Right-handed alpha
Helix 30
30
H
194 200Right-handed alpha
Helix 31
31
I
148 153Right-handed alpha
Helix 32
32
I
155 167Right-handed alpha
Helix 33
33
I
173 186Right-handed alpha
Helix 34
34
I
194 200Right-handed alpha
Helix 35
35
J
146 153Right-handed alpha
Helix 36
36
J
155 167Right-handed alpha
Helix 37
37
J
173 186Right-handed alpha
Helix 38
38
J
194 200Right-handed alpha
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There are 6 sheets in PDB entry 5A49. Click on sheet of interest to get list of strands forming it: AA, BA, A, FA, HA, JA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 209first strand
Strand 2
A
215 219anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 219first strand
Strand 2
B
205 209anti-parallel
Strand 3
C
205 209anti-parallel
Strand 4
C
215 219anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 173first strand
Strand 2
D
215 218anti-parallel
Strand 3
D
206 209anti-parallel
Strand 4
E
205 209anti-parallel
Strand 5
E
215 219anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
215 219first strand
Strand 2
F
205 209anti-parallel
Strand 3
G
206 209anti-parallel
Strand 4
G
215 218anti-parallel
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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
215 219first strand
Strand 2
H
205 209anti-parallel
Strand 3
I
205 209anti-parallel
Strand 4
I
215 219anti-parallel
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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
205 209first strand
Strand 2
J
215 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il