Analysis of interatomic Contacts of Structural Units in PDB entry:
5A4A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A4A entry

There is 1 chain in PDB entry 5A4A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 399TYR 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5A4A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
406 411Right-handed 310
Helix 2
2
A
428 439Right-handed alpha
Helix 3
3
A
460 470Right-handed alpha
Helix 4
4
A
484 490Right-handed alpha
Helix 5
5
A
493 511Right-handed alpha
Helix 6
6
A
523 527Right-handed 310
Helix 7
7
A
529 547Right-handed alpha
Helix 8
8
A
556 559Right-handed 310
Helix 9
9
A
567 570Right-handed 310
Helix 10
10
A
589 603Right-handed alpha
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There are 3 sheets in PDB entry 5A4A. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
423 427anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
454 456anti-parallel
Strand 3
A
423 427parallel
Strand 4
A
478 482parallel
Strand 5
A
514 518parallel
Strand 6
A
552 553parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
454 456anti-parallel
Strand 3
A
423 427parallel
Strand 4
A
419 420anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il