Analysis of interatomic Contacts of Structural Units in PDB entry:
5A4D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A4D entry

There are 5 chains in PDB entry 5A4D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	PRO 329
B	MET 6	PRO 329
C	LYS 4	PRO 329
D	GLY 3	PRO 329
E	MET 6	ARG 58

There are 91 helices in PDB entry 5A4D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	21	Right-handed 310
Helix 2	2	A	46	55	Right-handed alpha
Helix 3	3	A	124	130	Right-handed alpha
Helix 4	4	A	131	144	Right-handed alpha
Helix 5	5	A	166	179	Right-handed alpha
Helix 6	6	A	188	190	Right-handed 310
Helix 7	7	A	191	199	Right-handed alpha
Helix 8	8	A	208	213	Right-handed alpha
Helix 9	9	A	233	238	Right-handed alpha
Helix 10	10	A	253	266	Right-handed alpha
Helix 11	11	A	280	293	Right-handed alpha
Helix 12	12	A	308	319	Right-handed alpha
Helix 13	13	B	46	55	Right-handed alpha
Helix 14	14	B	124	130	Right-handed alpha
Helix 15	15	B	131	144	Right-handed alpha
Helix 16	16	B	166	179	Right-handed alpha
Helix 17	17	B	188	190	Right-handed 310
Helix 18	18	B	191	198	Right-handed alpha
Helix 19	19	B	208	213	Right-handed alpha
Helix 20	20	B	233	238	Right-handed alpha
Helix 21	21	B	253	266	Right-handed alpha
Helix 22	22	B	280	293	Right-handed alpha
Helix 23	23	B	308	319	Right-handed alpha
Helix 24	24	C	46	55	Right-handed alpha
Helix 25	25	C	124	130	Right-handed alpha
Helix 26	26	C	131	144	Right-handed alpha
Helix 27	27	C	166	179	Right-handed alpha
Helix 28	28	C	188	190	Right-handed 310
Helix 29	29	C	191	199	Right-handed alpha
Helix 30	30	C	208	213	Right-handed alpha
Helix 31	31	C	233	238	Right-handed alpha
Helix 32	32	C	253	266	Right-handed alpha
Helix 33	33	C	280	293	Right-handed alpha
Helix 34	34	C	308	319	Right-handed alpha
Helix 35	35	D	46	55	Right-handed alpha
Helix 36	36	D	124	130	Right-handed alpha
Helix 37	37	D	131	144	Right-handed alpha
Helix 38	38	D	166	179	Right-handed alpha
Helix 39	39	D	188	190	Right-handed 310
Helix 40	40	D	191	199	Right-handed alpha
Helix 41	41	D	208	213	Right-handed alpha
Helix 42	42	D	233	238	Right-handed alpha
Helix 43	43	D	253	266	Right-handed alpha
Helix 44	44	D	280	293	Right-handed alpha
Helix 45	45	D	308	319	Right-handed alpha
Helix 46	46	E	46	55	Right-handed alpha
Helix 47	47	E	124	130	Right-handed alpha
Helix 48	48	E	131	144	Right-handed alpha
Helix 49	49	E	166	179	Right-handed alpha
Helix 50	50	E	188	190	Right-handed 310
Helix 51	51	E	191	199	Right-handed alpha
Helix 52	52	E	208	213	Right-handed alpha
Helix 53	53	E	233	238	Right-handed alpha
Helix 54	54	E	253	266	Right-handed alpha
Helix 55	55	E	280	293	Right-handed alpha
Helix 56	56	E	308	319	Right-handed alpha
Helix 57	57	F	16	21	Right-handed 310
Helix 58	58	F	46	55	Right-handed alpha
Helix 59	59	F	124	130	Right-handed alpha
Helix 60	60	F	131	144	Right-handed alpha
Helix 61	61	F	166	179	Right-handed alpha
Helix 62	62	F	188	190	Right-handed 310
Helix 63	63	F	191	198	Right-handed alpha
Helix 64	64	F	208	213	Right-handed alpha
Helix 65	65	F	233	238	Right-handed alpha
Helix 66	66	F	253	266	Right-handed alpha
Helix 67	67	F	280	293	Right-handed alpha
Helix 68	68	F	308	319	Right-handed alpha
Helix 69	69	G	16	21	Right-handed 310
Helix 70	70	G	46	55	Right-handed alpha
Helix 71	71	G	124	130	Right-handed alpha
Helix 72	72	G	131	144	Right-handed alpha
Helix 73	73	G	166	179	Right-handed alpha
Helix 74	74	G	188	190	Right-handed 310
Helix 75	75	G	191	198	Right-handed alpha
Helix 76	76	G	208	213	Right-handed alpha
Helix 77	77	G	233	238	Right-handed alpha
Helix 78	78	G	253	266	Right-handed alpha
Helix 79	79	G	280	293	Right-handed alpha
Helix 80	80	G	308	319	Right-handed alpha
Helix 81	81	H	46	55	Right-handed alpha
Helix 82	82	H	124	130	Right-handed alpha
Helix 83	83	H	131	144	Right-handed alpha
Helix 84	84	H	166	179	Right-handed alpha
Helix 85	85	H	188	190	Right-handed 310
Helix 86	86	H	191	198	Right-handed alpha
Helix 87	87	H	208	213	Right-handed alpha
Helix 88	88	H	233	238	Right-handed alpha
Helix 89	89	H	253	266	Right-handed alpha
Helix 90	90	H	280	293	Right-handed alpha
Helix 91	91	H	308	319	Right-handed alpha

There are 40 sheets in PDB entry 5A4D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE, EA, EB, EC, ED, EE, FA, FB, FC, FD, FE, GA, GB, GC, GD, GE, HA, HB, HC, HD, HE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	22	27	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	35	44	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	92	96	anti-parallel
Strand 3	A	72	80	anti-parallel
Strand 4	A	35	44	anti-parallel
Strand 5	A	324	328	anti-parallel
Strand 6	A	300	305	parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	92	96	anti-parallel
Strand 3	A	72	80	anti-parallel
Strand 4	A	35	44	anti-parallel
Strand 5	A	108	112	anti-parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	205	first strand
Strand 2	A	181	187	parallel
Strand 3	A	157	162	parallel
Strand 4	A	222	227	parallel
Strand 5	A	241	249	parallel
Strand 6	A	271	274	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	10	first strand
Strand 2	B	22	25	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	112	first strand
Strand 2	B	35	44	anti-parallel

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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	92	96	anti-parallel
Strand 3	B	72	80	anti-parallel
Strand 4	B	35	44	anti-parallel
Strand 5	B	324	328	anti-parallel
Strand 6	B	300	305	parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	92	96	anti-parallel
Strand 3	B	72	80	anti-parallel
Strand 4	B	35	44	anti-parallel
Strand 5	B	108	112	anti-parallel

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There are 6 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	205	first strand
Strand 2	B	181	187	parallel
Strand 3	B	157	162	parallel
Strand 4	B	222	227	parallel
Strand 5	B	241	249	parallel
Strand 6	B	271	274	parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	22	27	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	35	44	anti-parallel

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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	92	96	anti-parallel
Strand 3	C	72	80	anti-parallel
Strand 4	C	35	44	anti-parallel
Strand 5	C	324	328	anti-parallel
Strand 6	C	300	305	parallel

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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	92	96	anti-parallel
Strand 3	C	72	80	anti-parallel
Strand 4	C	35	44	anti-parallel
Strand 5	C	108	112	anti-parallel

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There are 6 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	205	first strand
Strand 2	C	181	187	parallel
Strand 3	C	157	162	parallel
Strand 4	C	222	227	parallel
Strand 5	C	241	249	parallel
Strand 6	C	271	274	parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	22	27	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	112	first strand
Strand 2	D	35	44	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	92	96	anti-parallel
Strand 3	D	72	80	anti-parallel
Strand 4	D	35	44	anti-parallel
Strand 5	D	324	328	anti-parallel
Strand 6	D	300	305	parallel

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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	92	96	anti-parallel
Strand 3	D	72	80	anti-parallel
Strand 4	D	35	44	anti-parallel
Strand 5	D	108	112	anti-parallel

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There are 6 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	205	first strand
Strand 2	D	181	187	parallel
Strand 3	D	157	162	parallel
Strand 4	D	222	227	parallel
Strand 5	D	241	249	parallel
Strand 6	D	271	274	parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	10	first strand
Strand 2	E	22	25	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	112	first strand
Strand 2	E	35	44	anti-parallel

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There are 6 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	118	first strand
Strand 2	E	92	96	anti-parallel
Strand 3	E	72	77	anti-parallel
Strand 4	E	35	44	anti-parallel
Strand 5	E	324	328	anti-parallel
Strand 6	E	300	305	parallel

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There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	118	first strand
Strand 2	E	92	96	anti-parallel
Strand 3	E	72	77	anti-parallel
Strand 4	E	35	44	anti-parallel
Strand 5	E	108	112	anti-parallel

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There are 6 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	205	first strand
Strand 2	E	181	187	parallel
Strand 3	E	157	162	parallel
Strand 4	E	222	227	parallel
Strand 5	E	241	249	parallel
Strand 6	E	271	274	parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	10	first strand
Strand 2	F	22	27	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	112	first strand
Strand 2	F	35	44	anti-parallel

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There are 6 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	118	first strand
Strand 2	F	92	96	anti-parallel
Strand 3	F	72	80	anti-parallel
Strand 4	F	35	44	anti-parallel
Strand 5	F	324	328	anti-parallel
Strand 6	F	300	305	parallel

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There are 5 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	118	first strand
Strand 2	F	92	96	anti-parallel
Strand 3	F	72	80	anti-parallel
Strand 4	F	35	44	anti-parallel
Strand 5	F	108	112	anti-parallel

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There are 6 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	205	first strand
Strand 2	F	181	187	parallel
Strand 3	F	157	162	parallel
Strand 4	F	222	227	parallel
Strand 5	F	241	249	parallel
Strand 6	F	271	274	parallel

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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	10	first strand
Strand 2	G	22	27	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	112	first strand
Strand 2	G	35	44	anti-parallel

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There are 6 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	118	first strand
Strand 2	G	92	96	anti-parallel
Strand 3	G	72	80	anti-parallel
Strand 4	G	35	44	anti-parallel
Strand 5	G	324	328	anti-parallel
Strand 6	G	300	305	parallel

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There are 5 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	118	first strand
Strand 2	G	92	96	anti-parallel
Strand 3	G	72	80	anti-parallel
Strand 4	G	35	44	anti-parallel
Strand 5	G	108	112	anti-parallel

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There are 6 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	202	205	first strand
Strand 2	G	181	187	parallel
Strand 3	G	157	162	parallel
Strand 4	G	222	227	parallel
Strand 5	G	241	249	parallel
Strand 6	G	271	274	parallel

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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	10	first strand
Strand 2	H	22	27	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	112	first strand
Strand 2	H	35	44	anti-parallel

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There are 6 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	118	first strand
Strand 2	H	92	96	anti-parallel
Strand 3	H	72	80	anti-parallel
Strand 4	H	35	44	anti-parallel
Strand 5	H	324	328	anti-parallel
Strand 6	H	300	305	parallel

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There are 5 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	116	118	first strand
Strand 2	H	92	96	anti-parallel
Strand 3	H	72	80	anti-parallel
Strand 4	H	35	44	anti-parallel
Strand 5	H	108	112	anti-parallel

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There are 6 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	202	205	first strand
Strand 2	H	181	187	parallel
Strand 3	H	157	162	parallel
Strand 4	H	222	227	parallel
Strand 5	H	241	249	parallel
Strand 6	H	271	274	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A4D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A4D