Analysis of interatomic Contacts of Structural Units in PDB entry:
5A4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A4J entry

There are 4 chains in PDB entry 5A4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 559
B	LYS 4	PHE 559
C	LYS 4	PHE 559
D	LYS 4	PHE 559

There are104 helices in PDB entry 5A4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	13	Right-handed alpha
Helix 2	2	A	17	25	Right-handed alpha
Helix 3	3	A	28	30	Right-handed 310
Helix 4	4	A	44	51	Right-handed 310
Helix 5	5	A	72	87	Right-handed alpha
Helix 6	6	A	100	105	Right-handed 310
Helix 7	7	A	120	125	Right-handed alpha
Helix 8	8	A	130	152	Right-handed alpha
Helix 9	9	A	173	177	Right-handed 310
Helix 10	10	A	202	211	Right-handed alpha
Helix 11	11	A	213	224	Right-handed alpha
Helix 12	12	A	242	251	Right-handed alpha
Helix 13	13	A	283	294	Right-handed alpha
Helix 14	14	A	307	315	Right-handed alpha
Helix 15	15	A	315	321	Right-handed alpha
Helix 16	16	A	332	340	Right-handed alpha
Helix 17	17	A	343	347	Right-handed 310
Helix 18	18	A	351	359	Right-handed alpha
Helix 19	19	A	359	372	Right-handed alpha
Helix 20	20	A	388	401	Right-handed alpha
Helix 21	21	A	410	415	Right-handed alpha
Helix 22	22	A	416	418	Right-handed 310
Helix 23	23	A	419	433	Right-handed alpha
Helix 24	24	A	446	458	Right-handed alpha
Helix 25	25	A	467	480	Right-handed alpha
Helix 26	26	A	542	547	Right-handed 310
Helix 27	27	B	5	13	Right-handed alpha
Helix 28	28	B	17	24	Right-handed alpha
Helix 29	29	B	28	30	Right-handed 310
Helix 30	30	B	44	51	Right-handed 310
Helix 31	31	B	72	87	Right-handed alpha
Helix 32	32	B	102	107	Right-handed alpha
Helix 33	33	B	120	125	Right-handed alpha
Helix 34	34	B	130	152	Right-handed alpha
Helix 35	35	B	173	177	Right-handed 310
Helix 36	36	B	202	211	Right-handed alpha
Helix 37	37	B	213	224	Right-handed alpha
Helix 38	38	B	242	251	Right-handed alpha
Helix 39	39	B	283	294	Right-handed alpha
Helix 40	40	B	307	315	Right-handed alpha
Helix 41	41	B	315	321	Right-handed alpha
Helix 42	42	B	332	340	Right-handed alpha
Helix 43	43	B	343	347	Right-handed 310
Helix 44	44	B	351	359	Right-handed alpha
Helix 45	45	B	359	371	Right-handed alpha
Helix 46	46	B	388	401	Right-handed alpha
Helix 47	47	B	410	415	Right-handed alpha
Helix 48	48	B	416	418	Right-handed 310
Helix 49	49	B	419	433	Right-handed alpha
Helix 50	50	B	446	458	Right-handed alpha
Helix 51	51	B	467	480	Right-handed alpha
Helix 52	52	B	542	547	Right-handed 310
Helix 53	53	C	5	13	Right-handed alpha
Helix 54	54	C	17	23	Right-handed alpha
Helix 55	55	C	24	26	Right-handed 310
Helix 56	56	C	44	50	Right-handed 310
Helix 57	57	C	73	87	Right-handed alpha
Helix 58	58	C	102	107	Right-handed alpha
Helix 59	59	C	120	126	Right-handed alpha
Helix 60	60	C	130	153	Right-handed alpha
Helix 61	61	C	173	177	Right-handed 310
Helix 62	62	C	202	211	Right-handed alpha
Helix 63	63	C	213	224	Right-handed alpha
Helix 64	64	C	237	241	Right-handed alpha
Helix 65	65	C	242	250	Right-handed alpha
Helix 66	66	C	283	294	Right-handed alpha
Helix 67	67	C	307	315	Right-handed alpha
Helix 68	68	C	315	321	Right-handed alpha
Helix 69	69	C	332	340	Right-handed alpha
Helix 70	70	C	351	359	Right-handed alpha
Helix 71	71	C	359	372	Right-handed alpha
Helix 72	72	C	388	402	Right-handed alpha
Helix 73	73	C	410	415	Right-handed alpha
Helix 74	74	C	416	418	Right-handed 310
Helix 75	75	C	419	433	Right-handed alpha
Helix 76	76	C	446	458	Right-handed alpha
Helix 77	77	C	467	480	Right-handed alpha
Helix 78	78	C	542	547	Right-handed 310
Helix 79	79	D	5	13	Right-handed alpha
Helix 80	80	D	17	24	Right-handed alpha
Helix 81	81	D	44	49	Right-handed 310
Helix 82	82	D	73	87	Right-handed alpha
Helix 83	83	D	101	105	Right-handed 310
Helix 84	84	D	120	125	Right-handed alpha
Helix 85	85	D	130	152	Right-handed alpha
Helix 86	86	D	173	177	Right-handed 310
Helix 87	87	D	185	189	Right-handed 310
Helix 88	88	D	202	211	Right-handed alpha
Helix 89	89	D	213	224	Right-handed alpha
Helix 90	90	D	242	250	Right-handed alpha
Helix 91	91	D	283	294	Right-handed alpha
Helix 92	92	D	307	315	Right-handed alpha
Helix 93	93	D	315	321	Right-handed alpha
Helix 94	94	D	332	341	Right-handed alpha
Helix 95	95	D	343	347	Right-handed 310
Helix 96	96	D	351	359	Right-handed alpha
Helix 97	97	D	359	372	Right-handed alpha
Helix 98	98	D	388	402	Right-handed alpha
Helix 99	99	D	410	415	Right-handed alpha
Helix 100	100	D	416	418	Right-handed 310
Helix 101	101	D	419	432	Right-handed alpha
Helix 102	102	D	446	458	Right-handed alpha
Helix 103	103	D	467	480	Right-handed alpha
Helix 104	104	D	542	547	Right-handed 310

There are 31 sheets in PDB entry 5A4J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH, CA, CB, CC, CD, CE, CF, CG, CH, DA, DB, C, DD, DE, DF, G,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	40	42	parallel
Strand 3	A	257	261	parallel
Strand 4	A	266	269	anti-parallel
Strand 5	A	91	95	parallel
Strand 6	A	296	300	parallel
Strand 7	A	57	63	parallel
Strand 8	A	326	331	parallel
Strand 9	A	377	382	parallel
Strand 10	A	406	409	parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	40	42	parallel
Strand 3	A	257	261	parallel
Strand 4	A	116	119	anti-parallel
Strand 5	A	112	113	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	163	first strand
Strand 2	A	225	229	anti-parallel
Strand 3	A	234	236	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	169	first strand
Strand 2	A	196	198	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	181	first strand
Strand 2	A	192	194	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	466	first strand
Strand 2	A	510	513	parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	490	first strand
Strand 2	A	524	528	parallel
Strand 3	A	515	519	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	549	first strand
Strand 2	A	555	556	anti-parallel

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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	40	42	parallel
Strand 3	B	257	261	parallel
Strand 4	B	266	269	anti-parallel
Strand 5	B	91	95	parallel
Strand 6	B	296	300	parallel
Strand 7	B	57	63	parallel
Strand 8	B	326	331	parallel
Strand 9	B	377	382	parallel
Strand 10	B	406	409	parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	40	42	parallel
Strand 3	B	257	261	parallel
Strand 4	B	116	119	anti-parallel
Strand 5	B	111	113	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	163	first strand
Strand 2	B	225	229	anti-parallel
Strand 3	B	234	236	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	169	first strand
Strand 2	B	196	198	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	181	first strand
Strand 2	B	192	194	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	466	first strand
Strand 2	B	510	513	parallel

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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	490	first strand
Strand 2	B	524	528	parallel
Strand 3	B	515	519	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	549	first strand
Strand 2	B	555	556	anti-parallel

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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	39	42	anti-parallel
Strand 3	C	257	261	anti-parallel
Strand 4	C	266	269	anti-parallel
Strand 5	C	91	95	parallel
Strand 6	C	296	300	parallel
Strand 7	C	57	63	parallel
Strand 8	C	326	331	parallel
Strand 9	C	377	382	parallel
Strand 10	C	406	409	parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	39	42	anti-parallel
Strand 3	C	257	261	anti-parallel
Strand 4	C	116	119	parallel
Strand 5	C	111	113	parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	163	first strand
Strand 2	C	225	229	anti-parallel
Strand 3	C	234	236	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	169	first strand
Strand 2	C	196	198	parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	181	first strand
Strand 2	C	192	194	anti-parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	463	466	first strand
Strand 2	C	510	513	parallel

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There are 3 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	490	first strand
Strand 2	C	524	528	parallel
Strand 3	C	515	519	anti-parallel

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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	549	first strand
Strand 2	C	555	556	anti-parallel

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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	40	42	anti-parallel
Strand 3	D	257	261	anti-parallel
Strand 4	D	266	269	anti-parallel
Strand 5	D	91	95	parallel
Strand 6	D	296	300	parallel
Strand 7	D	57	63	parallel
Strand 8	D	326	331	parallel
Strand 9	D	377	382	parallel
Strand 10	D	406	409	parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	34	first strand
Strand 2	D	40	42	anti-parallel
Strand 3	D	257	261	anti-parallel
Strand 4	D	118	119	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	163	first strand
Strand 2	D	225	229	anti-parallel
Strand 3	D	234	236	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	169	first strand
Strand 2	D	196	198	parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	181	first strand
Strand 2	D	192	194	anti-parallel

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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	463	466	first strand
Strand 2	D	510	513	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	487	490	first strand
Strand 2	D	524	528	parallel
Strand 3	D	515	519	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A4J