Analysis of interatomic Contacts of Structural Units in PDB entry:
5A4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A4W entry

There are 6 chains in PDB entry 5A4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLN 212
B
 GLY 3GLN 212
C
 ALA 2GLN 212
D
 ALA 2GLN 212
E
 ALA 2GLN 212
F
 GLY 3GLN 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 5A4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
39 43Right-handed 310
Helix 3
3
A
45 49Right-handed 310
Helix 4
4
A
67 79Right-handed alpha
Helix 5
5
A
93 110Right-handed alpha
Helix 6
6
A
111 123Right-handed alpha
Helix 7
7
A
123 128Right-handed alpha
Helix 8
8
A
133 158Right-handed alpha
Helix 9
9
A
167 172Right-handed alpha
Helix 10
10
A
173 181Right-handed alpha
Helix 11
11
A
182 184Right-handed 310
Helix 12
12
A
185 191Right-handed alpha
Helix 13
13
A
192 204Right-handed alpha
Helix 14
14
A
205 212Right-handed alpha
Helix 15
15
B
12 25Right-handed alpha
Helix 16
16
B
35 39Right-handed 310
Helix 17
17
B
39 43Right-handed 310
Helix 18
18
B
45 49Right-handed 310
Helix 19
19
B
67 79Right-handed alpha
Helix 20
20
B
93 110Right-handed alpha
Helix 21
21
B
111 123Right-handed alpha
Helix 22
22
B
133 158Right-handed alpha
Helix 23
23
B
167 172Right-handed alpha
Helix 24
24
B
173 181Right-handed alpha
Helix 25
25
B
182 184Right-handed 310
Helix 26
26
B
185 191Right-handed alpha
Helix 27
27
B
192 204Right-handed alpha
Helix 28
28
B
205 212Right-handed alpha
Helix 29
29
C
12 25Right-handed alpha
Helix 30
30
C
39 43Right-handed 310
Helix 31
31
C
45 49Right-handed 310
Helix 32
32
C
67 79Right-handed alpha
Helix 33
33
C
93 110Right-handed alpha
Helix 34
34
C
111 123Right-handed alpha
Helix 35
35
C
123 128Right-handed alpha
Helix 36
36
C
133 158Right-handed alpha
Helix 37
37
C
167 172Right-handed alpha
Helix 38
38
C
173 181Right-handed alpha
Helix 39
39
C
182 184Right-handed 310
Helix 40
40
C
185 191Right-handed alpha
Helix 41
41
C
192 204Right-handed alpha
Helix 42
42
C
205 212Right-handed alpha
Helix 43
43
D
12 25Right-handed alpha
Helix 44
44
D
35 39Right-handed 310
Helix 45
45
D
39 43Right-handed 310
Helix 46
46
D
45 50Right-handed alpha
Helix 47
47
D
67 79Right-handed alpha
Helix 48
48
D
93 110Right-handed alpha
Helix 49
49
D
111 123Right-handed alpha
Helix 50
50
D
123 128Right-handed alpha
Helix 51
51
D
133 158Right-handed alpha
Helix 52
52
D
167 172Right-handed alpha
Helix 53
53
D
173 181Right-handed alpha
Helix 54
54
D
182 184Right-handed 310
Helix 55
55
D
185 191Right-handed alpha
Helix 56
56
D
192 204Right-handed alpha
Helix 57
57
D
205 211Right-handed alpha
Helix 58
58
E
12 25Right-handed alpha
Helix 59
59
E
35 39Right-handed 310
Helix 60
60
E
39 43Right-handed 310
Helix 61
61
E
45 49Right-handed 310
Helix 62
62
E
67 79Right-handed alpha
Helix 63
63
E
93 110Right-handed alpha
Helix 64
64
E
111 123Right-handed alpha
Helix 65
65
E
123 128Right-handed alpha
Helix 66
66
E
133 158Right-handed alpha
Helix 67
67
E
167 172Right-handed alpha
Helix 68
68
E
173 181Right-handed alpha
Helix 69
69
E
182 184Right-handed 310
Helix 70
70
E
185 191Right-handed alpha
Helix 71
71
E
192 204Right-handed alpha
Helix 72
72
E
205 212Right-handed alpha
Helix 73
73
F
12 25Right-handed alpha
Helix 74
74
F
35 39Right-handed 310
Helix 75
75
F
39 43Right-handed 310
Helix 76
76
F
45 50Right-handed alpha
Helix 77
77
F
67 79Right-handed alpha
Helix 78
78
F
93 110Right-handed alpha
Helix 79
79
F
111 128Right-handed alpha
Helix 80
80
F
137 158Right-handed alpha
Helix 81
81
F
167 172Right-handed alpha
Helix 82
82
F
173 181Right-handed alpha
Helix 83
83
F
182 184Right-handed 310
Helix 84
84
F
185 191Right-handed alpha
Helix 85
85
F
192 204Right-handed alpha
Helix 86
86
F
205 212Right-handed alpha
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There are 6 sheets in PDB entry 5A4W. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
4 8parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
63 66anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
4 8parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
63 66anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 33first strand
Strand 2
C
4 8parallel
Strand 3
C
57 60anti-parallel
Strand 4
C
63 66anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 33first strand
Strand 2
D
4 8parallel
Strand 3
D
57 60anti-parallel
Strand 4
D
63 66anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 33first strand
Strand 2
E
4 8parallel
Strand 3
E
57 60anti-parallel
Strand 4
E
63 66anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
30 33first strand
Strand 2
F
4 8parallel
Strand 3
F
57 60anti-parallel
Strand 4
F
63 66anti-parallel
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