Analysis of interatomic Contacts of Structural Units in PDB entry:
5A56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A56 entry

There is 1 chain in PDB entry 5A56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 316THR 1426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5A56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
400 403Right-handed 310
Helix 2
2
A
440 444Right-handed 310
Helix 3
3
A
521 525Right-handed 310
Helix 4
4
A
561 565Right-handed 310
Helix 5
5
A
585 594Right-handed alpha
Helix 6
6
A
602 607Right-handed 310
Helix 7
7
A
625 640Right-handed alpha
Helix 8
8
A
672 685Right-handed alpha
Helix 9
9
A
708 711Right-handed 310
Helix 10
10
A
734 741Right-handed alpha
Helix 11
11
A
742 755Right-handed alpha
Helix 12
12
A
775 789Right-handed alpha
Helix 13
13
A
808 813Right-handed alpha
Helix 14
14
A
826 834Right-handed alpha
Helix 15
15
A
835 837Right-handed 310
Helix 16
16
A
844 848Right-handed 310
Helix 17
17
A
848 852Right-handed 310
Helix 18
18
A
867 870Right-handed 310
Helix 19
19
A
872 891Right-handed alpha
Helix 20
20
A
942 946Right-handed 310
Helix 21
21
A
977 981Right-handed 310
Helix 22
22
A
998 1003Right-handed alpha
Helix 23
23
A
1077 1079Right-handed 310
Helix 24
24
A
1163 1167Right-handed 310
Helix 25
25
A
1270 1274Right-handed 310
Helix 26
26
A
1396 1404Right-handed alpha
Helix 27
27
A
1421 1426Right-handed 310
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There are 16 sheets in PDB entry 5A56. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 335first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
350 355anti-parallel
Strand 4
A
358 361anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
370 372anti-parallel
Strand 3
A
447 449anti-parallel
Strand 4
A
549 550anti-parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 387first strand
Strand 2
A
390 399anti-parallel
Strand 3
A
404 415anti-parallel
Strand 4
A
418 428anti-parallel
Strand 5
A
569 575anti-parallel
Strand 6
A
508 513anti-parallel
Strand 7
A
499 503anti-parallel
Strand 8
A
466 470anti-parallel
Strand 9
A
481 485anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 459first strand
Strand 2
A
539 546anti-parallel
Strand 3
A
529 536anti-parallel
Strand 4
A
494 497anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 555first strand
Strand 2
A
558 559anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 616first strand
Strand 2
A
644 650parallel
Strand 3
A
689 696parallel
Strand 4
A
760 764parallel
Strand 5
A
792 795parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
699 700first strand
Strand 2
A
729 732anti-parallel
Strand 3
A
722 725anti-parallel
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There are 10 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
894 900first strand
Strand 2
A
918 924anti-parallel
Strand 3
A
930 935anti-parallel
Strand 4
A
948 952anti-parallel
Strand 5
A
955 959anti-parallel
Strand 6
A
962 967anti-parallel
Strand 7
A
982 987anti-parallel
Strand 8
A
1039 1042anti-parallel
Strand 9
A
1006 1012anti-parallel
Strand 10
A
1015 1022anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 908first strand
Strand 2
A
911 915anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
993 996first strand
Strand 2
A
1028 1031anti-parallel
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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1073 1075first strand
Strand 2
A
1102 1107anti-parallel
Strand 3
A
1192 1197anti-parallel
Strand 4
A
1131 1136anti-parallel
Strand 5
A
1141 1146anti-parallel
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There are 5 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1081 1085first strand
Strand 2
A
1091 1095anti-parallel
Strand 3
A
1204 1213anti-parallel
Strand 4
A
1116 1125anti-parallel
Strand 5
A
1176 1183anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1230 1232first strand
Strand 2
A
1408 1418parallel
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There are 5 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1257 1261first strand
Strand 2
A
1284 1288anti-parallel
Strand 3
A
1408 1418anti-parallel
Strand 4
A
1313 1322anti-parallel
Strand 5
A
1365 1372anti-parallel
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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1257 1261first strand
Strand 2
A
1284 1288anti-parallel
Strand 3
A
1408 1418anti-parallel
Strand 4
A
1230 1232parallel
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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1244 1246first strand
Strand 2
A
1296 1301anti-parallel
Strand 3
A
1379 1385anti-parallel
Strand 4
A
1328 1334anti-parallel
Strand 5
A
1350 1353anti-parallel
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