Analysis of interatomic Contacts of Structural Units in PDB entry:
5A5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A5C entry

There are 2 chains in PDB entry 5A5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 330
B
 GLY -1PRO 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5A5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
285 287Right-handed 310
Helix 2
2
A
288 298Right-handed alpha
Helix 3
3
A
311 315Right-handed 310
Helix 4
4
A
318 326Right-handed alpha
Helix 5
5
B
285 287Right-handed 310
Helix 6
6
B
288 298Right-handed alpha
Helix 7
7
B
311 315Right-handed 310
Helix 8
8
B
318 326Right-handed alpha
Helix 9
9
C
285 287Right-handed 310
Helix 10
10
C
288 297Right-handed alpha
Helix 11
11
C
311 315Right-handed 310
Helix 12
12
C
318 326Right-handed alpha
Helix 13
13
D
285 287Right-handed 310
Helix 14
14
D
288 297Right-handed alpha
Helix 15
15
D
311 315Right-handed 310
Helix 16
16
D
318 326Right-handed alpha
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There are 6 sheets in PDB entry 5A5C. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, DA,

There are 13 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
Strand 3
A
34 36parallel
Strand 4
A
58 60parallel
Strand 5
A
82 84parallel
Strand 6
A
106 108parallel
Strand 7
A
130 132parallel
Strand 8
A
154 156parallel
Strand 9
A
178 180parallel
Strand 10
A
202 204parallel
Strand 11
A
226 228parallel
Strand 12
A
250 252parallel
Strand 13
A
274 276parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
308 310parallel
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There are 13 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
13 15anti-parallel
Strand 3
B
34 36parallel
Strand 4
B
58 60parallel
Strand 5
B
82 84parallel
Strand 6
B
106 108parallel
Strand 7
B
130 132parallel
Strand 8
B
154 156parallel
Strand 9
B
178 180parallel
Strand 10
B
202 204parallel
Strand 11
B
226 228parallel
Strand 12
B
250 252parallel
Strand 13
B
274 276parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 283first strand
Strand 2
B
308 310parallel
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There are 13 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
13 15anti-parallel
Strand 3
C
34 36parallel
Strand 4
C
58 60parallel
Strand 5
C
82 84parallel
Strand 6
C
106 108parallel
Strand 7
C
130 132parallel
Strand 8
C
154 156parallel
Strand 9
C
178 180parallel
Strand 10
C
202 204parallel
Strand 11
C
226 228parallel
Strand 12
C
250 252parallel
Strand 13
C
274 276parallel
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There are 13 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
D
13 15anti-parallel
Strand 3
D
34 36parallel
Strand 4
D
58 60parallel
Strand 5
D
82 84parallel
Strand 6
D
106 108parallel
Strand 7
D
130 132parallel
Strand 8
D
154 156parallel
Strand 9
D
178 180parallel
Strand 10
D
202 204parallel
Strand 11
D
226 228parallel
Strand 12
D
250 252parallel
Strand 13
D
274 276parallel
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