Analysis of interatomic Contacts of Structural Units in PDB entry:
5A5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A5D entry

There is 1 chain in PDB entry 5A5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22LYS 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5A5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 67Right-handed alpha
Helix 2
2
A
69 71Right-handed 310
Helix 3
3
A
77 81Right-handed 310
Helix 4
4
A
82 89Right-handed 310
Helix 5
5
A
101 108Right-handed alpha
Helix 6
6
A
116 121Right-handed 310
Helix 7
7
A
122 130Right-handed alpha
Helix 8
8
A
141 157Right-handed alpha
Helix 9
9
A
159 181Right-handed alpha
Helix 10
10
A
207 212Right-handed alpha
Helix 11
11
A
232 240Right-handed alpha
Helix 12
12
A
249 254Right-handed alpha
Helix 13
13
A
258 264Right-handed alpha
Helix 14
14
A
265 270Right-handed alpha
Helix 15
15
A
271 276Right-handed alpha
Helix 16
16
A
283 288Right-handed alpha
Helix 17
17
A
294 310Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5A5D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
42 47anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
53 55parallel
Strand 3
A
112 115parallel
Strand 4
A
132 134parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
99 100anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
186 193parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
196 200anti-parallel
Strand 3
A
186 193anti-parallel
Strand 4
A
243 248parallel
Strand 5
A
279 282parallel
Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
196 200anti-parallel
Strand 3
A
186 193anti-parallel
Strand 4
A
216 217parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il