Analysis of interatomic Contacts of Structural Units in PDB entry:
5A5G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A5G entry

There are 2 chains in PDB entry 5A5G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4PHE 561
B
 LYS 4PHE 561
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5A5G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 13Right-handed alpha
Helix 2
2
A
17 25Right-handed alpha
Helix 3
3
A
44 47Right-handed 310
Helix 4
4
A
71 86Right-handed alpha
Helix 5
5
A
99 104Right-handed 310
Helix 6
6
A
119 125Right-handed alpha
Helix 7
7
A
129 151Right-handed alpha
Helix 8
8
A
172 176Right-handed 310
Helix 9
9
A
201 210Right-handed alpha
Helix 10
10
A
212 222Right-handed alpha
Helix 11
11
A
241 249Right-handed alpha
Helix 12
12
A
282 293Right-handed alpha
Helix 13
13
A
306 314Right-handed alpha
Helix 14
14
A
314 320Right-handed alpha
Helix 15
15
A
331 339Right-handed alpha
Helix 16
16
A
350 370Right-handed alpha
Helix 17
17
A
387 400Right-handed alpha
Helix 18
18
A
409 414Right-handed alpha
Helix 19
19
A
415 417Right-handed 310
Helix 20
20
A
418 429Right-handed alpha
Helix 21
21
A
448 460Right-handed alpha
Helix 22
22
A
469 482Right-handed alpha
Helix 23
23
A
544 549Right-handed 310
Helix 24
24
B
5 12Right-handed alpha
Helix 25
25
B
17 24Right-handed alpha
Helix 26
26
B
28 30Right-handed 310
Helix 27
27
B
44 49Right-handed 310
Helix 28
28
B
71 86Right-handed alpha
Helix 29
29
B
99 105Right-handed alpha
Helix 30
30
B
119 125Right-handed alpha
Helix 31
31
B
129 151Right-handed alpha
Helix 32
32
B
172 176Right-handed 310
Helix 33
33
B
201 210Right-handed alpha
Helix 34
34
B
212 222Right-handed alpha
Helix 35
35
B
236 240Right-handed alpha
Helix 36
36
B
241 249Right-handed alpha
Helix 37
37
B
282 293Right-handed alpha
Helix 38
38
B
306 314Right-handed alpha
Helix 39
39
B
314 320Right-handed alpha
Helix 40
40
B
331 339Right-handed alpha
Helix 41
41
B
350 370Right-handed alpha
Helix 42
42
B
387 400Right-handed alpha
Helix 43
43
B
409 414Right-handed alpha
Helix 44
44
B
415 417Right-handed 310
Helix 45
45
B
418 429Right-handed alpha
Helix 46
46
B
448 460Right-handed alpha
Helix 47
47
B
469 482Right-handed alpha
Helix 48
48
B
544 549Right-handed 310
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There are 16 sheets in PDB entry 5A5G. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
40 42parallel
Strand 3
A
256 260parallel
Strand 4
A
265 268anti-parallel
Strand 5
A
90 94parallel
Strand 6
A
295 299parallel
Strand 7
A
56 62parallel
Strand 8
A
325 330parallel
Strand 9
A
376 381parallel
Strand 10
A
405 408parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
40 42parallel
Strand 3
A
256 260parallel
Strand 4
A
115 118anti-parallel
Strand 5
A
110 112anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
224 228anti-parallel
Strand 3
A
233 235anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
195 197parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
191 193anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 468first strand
Strand 2
A
512 515parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 492first strand
Strand 2
A
526 530parallel
Strand 3
A
517 521anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 551first strand
Strand 2
A
557 558anti-parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
40 42parallel
Strand 3
B
256 260parallel
Strand 4
B
265 268anti-parallel
Strand 5
B
90 94parallel
Strand 6
B
295 299parallel
Strand 7
B
56 62parallel
Strand 8
B
325 330parallel
Strand 9
B
376 381parallel
Strand 10
B
404 408parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
40 42parallel
Strand 3
B
256 260parallel
Strand 4
B
115 118anti-parallel
Strand 5
B
110 112anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 162first strand
Strand 2
B
224 228anti-parallel
Strand 3
B
233 235anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
195 197parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
191 193anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
465 468first strand
Strand 2
B
512 515parallel
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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 492first strand
Strand 2
B
526 530parallel
Strand 3
B
517 521anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 551first strand
Strand 2
B
557 558anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il