Analysis of interatomic Contacts of Structural Units in PDB entry:
5A5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A5J entry

There is 1 chain in PDB entry 5A5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 26HIS 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5A5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 62Right-handed alpha
Helix 2
2
A
79 88Right-handed alpha
Helix 3
3
A
91 94Right-handed 310
Helix 4
4
A
116 131Right-handed alpha
Helix 5
5
A
140 158Right-handed alpha
Helix 6
6
A
166 183Right-handed alpha
Helix 7
7
A
191 209Right-handed alpha
Helix 8
8
A
229 254Right-handed alpha
Helix 9
9
A
262 274Right-handed alpha
Helix 10
10
A
283 332Right-handed alpha
Helix 11
11
A
338 343Right-handed alpha
Helix 12
12
A
345 360Right-handed alpha
Helix 13
13
A
390 396Right-handed alpha
Helix 14
14
A
408 412Right-handed 310
Helix 15
15
A
430 434Right-handed 310
Helix 16
16
A
437 455Right-handed alpha
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There are 3 sheets in PDB entry 5A5J. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
74 77anti-parallel
Strand 3
A
386 389parallel
Strand 4
A
368 369anti-parallel
Strand 5
A
96 97anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
380 381anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 460first strand
Strand 2
A
485 489anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il