Analysis of interatomic Contacts of Structural Units in PDB entry:
5A5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A5X entry

There are 2 chains in PDB entry 5A5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 38THR 457
B
 GLU 42GLN 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5A5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 78Right-handed alpha
Helix 2
2
A
89 98Right-handed alpha
Helix 3
3
A
144 149Right-handed 310
Helix 4
4
A
159 172Right-handed alpha
Helix 5
5
A
184 194Right-handed alpha
Helix 6
6
A
204 211Right-handed alpha
Helix 7
7
A
212 214Right-handed 310
Helix 8
8
A
239 255Right-handed alpha
Helix 9
9
A
256 266Right-handed alpha
Helix 10
10
A
276 287Right-handed alpha
Helix 11
11
A
287 302Right-handed alpha
Helix 12
12
A
305 318Right-handed alpha
Helix 13
13
A
336 344Right-handed alpha
Helix 14
14
A
350 369Right-handed alpha
Helix 15
15
A
376 389Right-handed alpha
Helix 16
16
A
389 404Right-handed alpha
Helix 17
17
A
409 417Right-handed alpha
Helix 18
18
A
418 421Right-handed 310
Helix 19
19
A
422 427Right-handed alpha
Helix 20
20
A
435 456Right-handed alpha
Helix 21
21
B
65 79Right-handed alpha
Helix 22
22
B
89 99Right-handed alpha
Helix 23
23
B
144 149Right-handed 310
Helix 24
24
B
159 172Right-handed alpha
Helix 25
25
B
184 194Right-handed alpha
Helix 26
26
B
204 211Right-handed alpha
Helix 27
27
B
212 214Right-handed 310
Helix 28
28
B
239 255Right-handed alpha
Helix 29
29
B
256 266Right-handed alpha
Helix 30
30
B
275 287Right-handed alpha
Helix 31
31
B
287 302Right-handed alpha
Helix 32
32
B
305 318Right-handed alpha
Helix 33
33
B
336 344Right-handed alpha
Helix 34
34
B
350 369Right-handed alpha
Helix 35
35
B
376 389Right-handed alpha
Helix 36
36
B
389 403Right-handed alpha
Helix 37
37
B
409 417Right-handed alpha
Helix 38
38
B
418 421Right-handed 310
Helix 39
39
B
422 427Right-handed alpha
Helix 40
40
B
435 457Right-handed alpha
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There are 9 sheets in PDB entry 5A5X. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
44 49parallel
Strand 3
A
105 106parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
62 64anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 129first strand
Strand 2
A
227 234anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
217 222anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
178 180parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 86first strand
Strand 2
B
44 49parallel
Strand 3
B
105 106parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
62 64anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 129first strand
Strand 2
B
227 234anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
153 156parallel
Strand 3
B
199 203parallel
Strand 4
B
131 136anti-parallel
Strand 5
B
217 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il