Analysis of interatomic Contacts of Structural Units in PDB entry:
5A61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A61 entry

There is 1 chain in PDB entry 5A61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LEU 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5A61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 24Right-handed alpha
Helix 2
2
A
46 51Right-handed alpha
Helix 3
3
A
94 98Right-handed 310
Helix 4
4
A
99 103Right-handed 310
Helix 5
5
A
111 116Right-handed alpha
Helix 6
6
A
167 179Right-handed alpha
Helix 7
7
A
190 200Right-handed alpha
Helix 8
8
A
220 245Right-handed alpha
Helix 9
9
A
249 268Right-handed alpha
Helix 10
10
A
273 276Right-handed 310
Helix 11
11
A
277 294Right-handed alpha
Helix 12
12
A
296 303Right-handed alpha
Helix 13
13
A
303 319Right-handed alpha
Helix 14
14
A
322 326Right-handed 310
Helix 15
15
A
327 335Right-handed alpha
Helix 16
16
A
337 358Right-handed alpha
Helix 17
17
A
365 367Right-handed 310
Helix 18
18
A
368 383Right-handed alpha
Helix 19
19
A
387 408Right-handed alpha
Helix 20
20
A
409 423Right-handed alpha
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There are 2 sheets in PDB entry 5A61. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
78 88anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
2 11anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il