Analysis of interatomic Contacts of Structural Units in PDB entry:
5A62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A62 entry

There is 1 chain in PDB entry 5A62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2VAL 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5A62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 38Right-handed 310
Helix 2
2
A
39 49Right-handed alpha
Helix 3
3
A
73 88Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
130 135Right-handed alpha
Helix 6
6
A
135 148Right-handed alpha
Helix 7
7
A
148 158Right-handed alpha
Helix 8
8
A
169 181Right-handed alpha
Helix 9
9
A
184 195Right-handed alpha
Helix 10
10
A
196 198Right-handed 310
Helix 11
11
A
201 210Right-handed alpha
Helix 12
12
A
221 235Right-handed alpha
Helix 13
13
A
249 254Right-handed alpha
Helix 14
14
A
255 273Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 5A62.

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
52 56anti-parallel
Strand 4
A
25 29parallel
Strand 5
A
93 98parallel
Strand 6
A
116 122parallel
Strand 7
A
212 218parallel
Strand 8
A
239 243parallel
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