Analysis of interatomic Contacts of Structural Units in PDB entry:
5A6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A6B entry

There are 4 chains in PDB entry 5A6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	THR 626
B	SER -3	THR 626
C	SER 0	THR 626
D	SER 0	THR 626

There are108 helices in PDB entry 5A6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	19	Right-handed alpha
Helix 2	2	A	56	69	Right-handed alpha
Helix 3	3	A	99	114	Right-handed alpha
Helix 4	4	A	142	155	Right-handed alpha
Helix 5	5	A	170	175	Right-handed alpha
Helix 6	6	A	178	183	Right-handed alpha
Helix 7	7	A	195	210	Right-handed alpha
Helix 8	8	A	230	237	Right-handed alpha
Helix 9	9	A	240	260	Right-handed alpha
Helix 10	10	A	268	271	Right-handed 310
Helix 11	11	A	287	299	Right-handed alpha
Helix 12	12	A	312	325	Right-handed alpha
Helix 13	13	A	345	363	Right-handed alpha
Helix 14	14	A	385	398	Right-handed alpha
Helix 15	15	A	403	413	Right-handed alpha
Helix 16	16	A	415	421	Right-handed alpha
Helix 17	17	A	422	427	Right-handed 310
Helix 18	18	A	439	447	Right-handed alpha
Helix 19	19	A	454	458	Right-handed 310
Helix 20	20	A	459	480	Right-handed alpha
Helix 21	21	A	481	483	Right-handed 310
Helix 22	22	A	484	514	Right-handed alpha
Helix 23	23	A	516	526	Right-handed alpha
Helix 24	24	A	526	550	Right-handed alpha
Helix 25	25	A	554	581	Right-handed alpha
Helix 26	26	A	587	592	Right-handed 310
Helix 27	27	A	613	619	Right-handed alpha
Helix 28	28	B	8	19	Right-handed alpha
Helix 29	29	B	56	69	Right-handed alpha
Helix 30	30	B	99	114	Right-handed alpha
Helix 31	31	B	142	156	Right-handed alpha
Helix 32	32	B	170	175	Right-handed alpha
Helix 33	33	B	178	183	Right-handed alpha
Helix 34	34	B	195	210	Right-handed alpha
Helix 35	35	B	230	237	Right-handed alpha
Helix 36	36	B	240	259	Right-handed alpha
Helix 37	37	B	268	271	Right-handed 310
Helix 38	38	B	287	299	Right-handed alpha
Helix 39	39	B	312	327	Right-handed alpha
Helix 40	40	B	345	363	Right-handed alpha
Helix 41	41	B	385	399	Right-handed alpha
Helix 42	42	B	403	413	Right-handed alpha
Helix 43	43	B	415	421	Right-handed alpha
Helix 44	44	B	422	427	Right-handed 310
Helix 45	45	B	439	447	Right-handed alpha
Helix 46	46	B	454	458	Right-handed 310
Helix 47	47	B	459	480	Right-handed alpha
Helix 48	48	B	481	483	Right-handed 310
Helix 49	49	B	484	502	Right-handed alpha
Helix 50	50	B	503	514	Right-handed alpha
Helix 51	51	B	516	526	Right-handed alpha
Helix 52	52	B	526	550	Right-handed alpha
Helix 53	53	B	554	581	Right-handed alpha
Helix 54	54	B	587	592	Right-handed 310
Helix 55	55	B	613	619	Right-handed alpha
Helix 56	56	C	8	19	Right-handed alpha
Helix 57	57	C	56	70	Right-handed alpha
Helix 58	58	C	99	114	Right-handed alpha
Helix 59	59	C	142	156	Right-handed alpha
Helix 60	60	C	170	175	Right-handed alpha
Helix 61	61	C	178	183	Right-handed alpha
Helix 62	62	C	195	210	Right-handed alpha
Helix 63	63	C	230	237	Right-handed alpha
Helix 64	64	C	240	259	Right-handed alpha
Helix 65	65	C	288	298	Right-handed alpha
Helix 66	66	C	312	325	Right-handed alpha
Helix 67	67	C	345	363	Right-handed alpha
Helix 68	68	C	385	399	Right-handed alpha
Helix 69	69	C	403	413	Right-handed alpha
Helix 70	70	C	415	421	Right-handed alpha
Helix 71	71	C	422	427	Right-handed 310
Helix 72	72	C	439	447	Right-handed alpha
Helix 73	73	C	454	458	Right-handed 310
Helix 74	74	C	459	479	Right-handed alpha
Helix 75	75	C	480	483	Right-handed 310
Helix 76	76	C	484	514	Right-handed alpha
Helix 77	77	C	516	526	Right-handed alpha
Helix 78	78	C	526	550	Right-handed alpha
Helix 79	79	C	554	581	Right-handed alpha
Helix 80	80	C	587	592	Right-handed alpha
Helix 81	81	C	613	619	Right-handed alpha
Helix 82	82	D	8	19	Right-handed alpha
Helix 83	83	D	56	72	Right-handed alpha
Helix 84	84	D	99	114	Right-handed alpha
Helix 85	85	D	142	156	Right-handed alpha
Helix 86	86	D	170	175	Right-handed alpha
Helix 87	87	D	178	183	Right-handed alpha
Helix 88	88	D	195	210	Right-handed alpha
Helix 89	89	D	230	237	Right-handed alpha
Helix 90	90	D	240	260	Right-handed alpha
Helix 91	91	D	268	274	Right-handed 310
Helix 92	92	D	287	299	Right-handed alpha
Helix 93	93	D	312	325	Right-handed alpha
Helix 94	94	D	345	363	Right-handed alpha
Helix 95	95	D	385	399	Right-handed alpha
Helix 96	96	D	403	413	Right-handed alpha
Helix 97	97	D	415	421	Right-handed alpha
Helix 98	98	D	422	427	Right-handed 310
Helix 99	99	D	439	447	Right-handed alpha
Helix 100	100	D	454	458	Right-handed 310
Helix 101	101	D	459	480	Right-handed alpha
Helix 102	102	D	481	483	Right-handed 310
Helix 103	103	D	484	514	Right-handed alpha
Helix 104	104	D	516	526	Right-handed alpha
Helix 105	105	D	526	550	Right-handed alpha
Helix 106	106	D	554	581	Right-handed alpha
Helix 107	107	D	587	592	Right-handed 310
Helix 108	108	D	613	619	Right-handed alpha

There are 11 sheets in PDB entry 5A6B. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	28	33	parallel
Strand 3	A	47	52	parallel
Strand 4	A	39	44	anti-parallel
Strand 5	A	75	79	anti-parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	91	first strand
Strand 2	A	367	372	parallel
Strand 3	A	330	335	parallel
Strand 4	A	301	306	parallel
Strand 5	A	262	266	parallel
Strand 6	A	216	218	parallel
Strand 7	A	159	163	parallel
Strand 8	A	117	121	parallel
Strand 9	A	85	91	parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	28	33	parallel
Strand 3	B	47	52	parallel
Strand 4	B	39	44	anti-parallel
Strand 5	B	75	79	anti-parallel

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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	91	first strand
Strand 2	B	367	372	parallel
Strand 3	B	330	335	parallel
Strand 4	B	301	306	parallel
Strand 5	B	262	266	parallel
Strand 6	B	216	218	parallel
Strand 7	B	159	163	parallel
Strand 8	B	117	121	parallel
Strand 9	B	85	91	parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	190	191	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	28	33	parallel
Strand 3	C	47	52	parallel
Strand 4	C	39	44	anti-parallel
Strand 5	C	75	79	anti-parallel

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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	91	first strand
Strand 2	C	367	372	parallel
Strand 3	C	330	335	parallel
Strand 4	C	301	306	parallel
Strand 5	C	262	266	parallel
Strand 6	C	216	218	parallel
Strand 7	C	159	163	parallel
Strand 8	C	117	121	parallel
Strand 9	C	85	91	parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	190	191	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	28	33	parallel
Strand 3	D	47	52	parallel
Strand 4	D	39	44	anti-parallel
Strand 5	D	75	79	anti-parallel

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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	91	first strand
Strand 2	D	367	372	parallel
Strand 3	D	330	335	parallel
Strand 4	D	301	306	parallel
Strand 5	D	262	266	parallel
Strand 6	D	216	218	parallel
Strand 7	D	159	163	parallel
Strand 8	D	117	121	parallel
Strand 9	D	85	91	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	187	first strand
Strand 2	D	190	191	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A6B