Analysis of interatomic Contacts of Structural Units in PDB entry:
5A6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A6D entry

There are 2 chains in PDB entry 5A6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2VAL 247
B
 PRO 2VAL 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5A6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
56 58Right-handed 310
Helix 3
3
A
73 81Right-handed alpha
Helix 4
4
A
138 150Right-handed alpha
Helix 5
5
A
201 209Right-handed alpha
Helix 6
6
B
9 22Right-handed alpha
Helix 7
7
B
56 58Right-handed 310
Helix 8
8
B
73 81Right-handed alpha
Helix 9
9
B
138 149Right-handed alpha
Helix 10
10
B
201 209Right-handed alpha
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There are 6 sheets in PDB entry 5A6D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
3 8anti-parallel
Strand 3
A
88 93anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
108 114anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
35 41anti-parallel
Strand 4
A
47 54anti-parallel
Strand 5
A
237 243anti-parallel
Strand 6
A
227 233anti-parallel
Strand 7
A
216 221anti-parallel
Strand 8
A
132 137anti-parallel
Strand 9
A
186 191anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 180first strand
Strand 2
A
163 169anti-parallel
Strand 3
A
154 159anti-parallel
Strand 4
A
195 200anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
3 8anti-parallel
Strand 3
B
88 93anti-parallel
Strand 4
B
98 104anti-parallel
Strand 5
B
108 114anti-parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
35 41anti-parallel
Strand 4
B
47 54anti-parallel
Strand 5
B
237 243anti-parallel
Strand 6
B
227 233anti-parallel
Strand 7
B
216 221anti-parallel
Strand 8
B
132 137anti-parallel
Strand 9
B
186 191anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 180first strand
Strand 2
B
163 169anti-parallel
Strand 3
B
154 159anti-parallel
Strand 4
B
195 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il