Analysis of interatomic Contacts of Structural Units in PDB entry:
5A6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A6E entry

There are 4 chains in PDB entry 5A6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 70UNK 234
B
 SER 244LYS 337
C
 LYS 351ALA 1171
D
 UNK 1071UNK 1113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 5A6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
70 83Right-handed alpha
Helix 2
2
A
89 116Right-handed alpha
Helix 3
3
A
121 137Right-handed alpha
Helix 4
4
A
148 167Right-handed alpha
Helix 5
5
A
172 177Right-handed alpha
Helix 6
6
A
179 199Right-handed alpha
Helix 7
7
A
209 234Right-handed alpha
Helix 8
8
B
244 276Right-handed alpha
Helix 9
9
B
279 292Right-handed alpha
Helix 10
10
B
303 337Right-handed alpha
Helix 11
11
C
361 373Right-handed alpha
Helix 12
12
C
394 399Right-handed alpha
Helix 13
13
C
417 424Right-handed alpha
Helix 14
14
C
442 461Right-handed alpha
Helix 15
15
C
472 479Right-handed 310
Helix 16
16
C
488 499Right-handed alpha
Helix 17
17
C
504 513Right-handed alpha
Helix 18
18
C
527 535Right-handed alpha
Helix 19
19
C
558 567Right-handed alpha
Helix 20
20
C
784 792Right-handed alpha
Helix 21
21
C
816 824Right-handed alpha
Helix 22
22
C
838 844Right-handed alpha
Helix 23
23
C
867 870Right-handed 310
Helix 24
24
C
871 885Right-handed alpha
Helix 25
25
C
898 903Right-handed 310
Helix 26
26
C
909 924Right-handed alpha
Helix 27
27
C
934 939Right-handed alpha
Helix 28
28
C
945 956Right-handed alpha
Helix 29
29
C
960 970Right-handed alpha
Helix 30
30
C
988 992Right-handed 310
Helix 31
31
C
995 1003Right-handed alpha
Helix 32
32
D
1081 1098Right-handed alpha
Helix 33
33
D
1100 1113Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5A6E. Click on sheet of interest to get list of strands forming it: CA, CB, CC, CD, CE, CF,

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
408 412first strand
Strand 2
C
382 387parallel
Strand 3
C
352 356parallel
Strand 4
C
431 434parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
467 470first strand
Strand 2
C
484 487parallel
Back to list of sheets
Back to top of page

There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
539 543first strand
Strand 2
C
601 605anti-parallel
Strand 3
C
573 574anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
829 833first strand
Strand 2
C
807 811parallel
Strand 3
C
776 780parallel
Strand 4
C
852 856parallel
Strand 5
C
889 894parallel
Strand 6
C
942 944parallel
Back to list of sheets
Back to top of page

There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
979 984first strand
Strand 2
C
1161 1166anti-parallel
Strand 3
C
1008 1010anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1012 1013first strand
Strand 2
C
1147 1148anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il