Analysis of interatomic Contacts of Structural Units in PDB entry:
5A6J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A6J entry

There are 4 chains in PDB entry 5A6J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -3	THR 626
B	SER 0	THR 626
C	VAL 2	THR 626
D	SER 0	THR 626

There are110 helices in PDB entry 5A6J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	20	Right-handed alpha
Helix 2	2	A	56	72	Right-handed alpha
Helix 3	3	A	99	114	Right-handed alpha
Helix 4	4	A	142	156	Right-handed alpha
Helix 5	5	A	170	175	Right-handed alpha
Helix 6	6	A	178	183	Right-handed alpha
Helix 7	7	A	195	210	Right-handed alpha
Helix 8	8	A	230	237	Right-handed alpha
Helix 9	9	A	240	259	Right-handed alpha
Helix 10	10	A	268	274	Right-handed 310
Helix 11	11	A	287	299	Right-handed alpha
Helix 12	12	A	312	325	Right-handed alpha
Helix 13	13	A	345	363	Right-handed alpha
Helix 14	14	A	385	398	Right-handed alpha
Helix 15	15	A	403	413	Right-handed alpha
Helix 16	16	A	415	421	Right-handed alpha
Helix 17	17	A	422	427	Right-handed 310
Helix 18	18	A	439	447	Right-handed alpha
Helix 19	19	A	454	458	Right-handed 310
Helix 20	20	A	459	481	Right-handed alpha
Helix 21	21	A	484	514	Right-handed alpha
Helix 22	22	A	516	526	Right-handed alpha
Helix 23	23	A	526	550	Right-handed alpha
Helix 24	24	A	554	581	Right-handed alpha
Helix 25	25	A	587	592	Right-handed 310
Helix 26	26	A	613	619	Right-handed alpha
Helix 27	27	B	8	19	Right-handed alpha
Helix 28	28	B	56	72	Right-handed alpha
Helix 29	29	B	99	114	Right-handed alpha
Helix 30	30	B	142	155	Right-handed alpha
Helix 31	31	B	170	175	Right-handed alpha
Helix 32	32	B	178	183	Right-handed alpha
Helix 33	33	B	195	210	Right-handed alpha
Helix 34	34	B	230	237	Right-handed alpha
Helix 35	35	B	240	260	Right-handed alpha
Helix 36	36	B	268	274	Right-handed 310
Helix 37	37	B	287	299	Right-handed alpha
Helix 38	38	B	312	327	Right-handed alpha
Helix 39	39	B	345	363	Right-handed alpha
Helix 40	40	B	381	384	Right-handed 310
Helix 41	41	B	385	398	Right-handed alpha
Helix 42	42	B	403	413	Right-handed alpha
Helix 43	43	B	415	421	Right-handed alpha
Helix 44	44	B	422	427	Right-handed 310
Helix 45	45	B	439	447	Right-handed alpha
Helix 46	46	B	454	458	Right-handed 310
Helix 47	47	B	459	480	Right-handed alpha
Helix 48	48	B	481	483	Right-handed 310
Helix 49	49	B	484	514	Right-handed alpha
Helix 50	50	B	516	526	Right-handed alpha
Helix 51	51	B	526	550	Right-handed alpha
Helix 52	52	B	554	581	Right-handed alpha
Helix 53	53	B	587	592	Right-handed 310
Helix 54	54	B	613	619	Right-handed alpha
Helix 55	55	C	8	19	Right-handed alpha
Helix 56	56	C	56	72	Right-handed alpha
Helix 57	57	C	99	114	Right-handed alpha
Helix 58	58	C	142	155	Right-handed alpha
Helix 59	59	C	170	175	Right-handed alpha
Helix 60	60	C	178	183	Right-handed alpha
Helix 61	61	C	195	210	Right-handed alpha
Helix 62	62	C	230	237	Right-handed alpha
Helix 63	63	C	240	260	Right-handed alpha
Helix 64	64	C	268	271	Right-handed 310
Helix 65	65	C	287	300	Right-handed alpha
Helix 66	66	C	312	328	Right-handed alpha
Helix 67	67	C	345	363	Right-handed alpha
Helix 68	68	C	381	384	Right-handed 310
Helix 69	69	C	385	398	Right-handed alpha
Helix 70	70	C	403	413	Right-handed alpha
Helix 71	71	C	415	420	Right-handed alpha
Helix 72	72	C	421	427	Right-handed 310
Helix 73	73	C	439	447	Right-handed alpha
Helix 74	74	C	454	458	Right-handed 310
Helix 75	75	C	459	479	Right-handed alpha
Helix 76	76	C	480	483	Right-handed 310
Helix 77	77	C	484	502	Right-handed alpha
Helix 78	78	C	503	514	Right-handed alpha
Helix 79	79	C	516	526	Right-handed alpha
Helix 80	80	C	526	550	Right-handed alpha
Helix 81	81	C	554	581	Right-handed alpha
Helix 82	82	C	587	592	Right-handed 310
Helix 83	83	C	613	619	Right-handed alpha
Helix 84	84	D	8	19	Right-handed alpha
Helix 85	85	D	56	72	Right-handed alpha
Helix 86	86	D	99	114	Right-handed alpha
Helix 87	87	D	142	155	Right-handed alpha
Helix 88	88	D	170	175	Right-handed alpha
Helix 89	89	D	178	183	Right-handed alpha
Helix 90	90	D	195	210	Right-handed alpha
Helix 91	91	D	230	237	Right-handed alpha
Helix 92	92	D	240	259	Right-handed alpha
Helix 93	93	D	268	271	Right-handed 310
Helix 94	94	D	289	299	Right-handed alpha
Helix 95	95	D	312	324	Right-handed alpha
Helix 96	96	D	345	363	Right-handed alpha
Helix 97	97	D	385	398	Right-handed alpha
Helix 98	98	D	403	413	Right-handed alpha
Helix 99	99	D	415	421	Right-handed alpha
Helix 100	100	D	422	427	Right-handed 310
Helix 101	101	D	439	447	Right-handed alpha
Helix 102	102	D	454	458	Right-handed 310
Helix 103	103	D	459	480	Right-handed alpha
Helix 104	104	D	481	483	Right-handed 310
Helix 105	105	D	484	514	Right-handed alpha
Helix 106	106	D	516	526	Right-handed alpha
Helix 107	107	D	526	550	Right-handed alpha
Helix 108	108	D	554	581	Right-handed alpha
Helix 109	109	D	587	592	Right-handed 310
Helix 110	110	D	613	619	Right-handed alpha

There are 12 sheets in PDB entry 5A6J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	28	33	parallel
Strand 3	A	47	52	parallel
Strand 4	A	39	44	anti-parallel
Strand 5	A	75	79	anti-parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	91	first strand
Strand 2	A	367	372	parallel
Strand 3	A	330	335	parallel
Strand 4	A	301	306	parallel
Strand 5	A	262	266	parallel
Strand 6	A	216	218	parallel
Strand 7	A	159	163	parallel
Strand 8	A	117	121	parallel
Strand 9	A	85	91	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	187	first strand
Strand 2	A	190	191	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	28	33	parallel
Strand 3	B	47	52	parallel
Strand 4	B	39	44	anti-parallel
Strand 5	B	75	79	anti-parallel

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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	91	first strand
Strand 2	B	367	372	parallel
Strand 3	B	330	335	parallel
Strand 4	B	301	306	parallel
Strand 5	B	262	266	parallel
Strand 6	B	216	218	parallel
Strand 7	B	159	163	parallel
Strand 8	B	117	121	parallel
Strand 9	B	85	91	parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	190	191	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	28	33	parallel
Strand 3	C	47	52	parallel
Strand 4	C	39	44	anti-parallel
Strand 5	C	75	79	anti-parallel

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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	91	first strand
Strand 2	C	367	372	parallel
Strand 3	C	330	335	parallel
Strand 4	C	301	306	parallel
Strand 5	C	262	266	parallel
Strand 6	C	216	218	parallel
Strand 7	C	159	163	parallel
Strand 8	C	117	121	parallel
Strand 9	C	85	91	parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	190	191	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	28	33	parallel
Strand 3	D	47	52	parallel
Strand 4	D	39	44	anti-parallel
Strand 5	D	75	79	anti-parallel

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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	91	first strand
Strand 2	D	367	372	parallel
Strand 3	D	330	335	parallel
Strand 4	D	301	306	parallel
Strand 5	D	262	266	parallel
Strand 6	D	216	218	parallel
Strand 7	D	159	163	parallel
Strand 8	D	117	121	parallel
Strand 9	D	85	91	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	187	first strand
Strand 2	D	190	191	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A6J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A6J