Analysis of interatomic Contacts of Structural Units in PDB entry:
5A6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A6K entry

There are 2 chains in PDB entry 5A6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 626
B
 VAL 2THR 626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5A6K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 19Right-handed alpha
Helix 2
2
A
56 72Right-handed alpha
Helix 3
3
A
99 114Right-handed alpha
Helix 4
4
A
142 155Right-handed alpha
Helix 5
5
A
170 175Right-handed alpha
Helix 6
6
A
178 183Right-handed alpha
Helix 7
7
A
195 210Right-handed alpha
Helix 8
8
A
230 237Right-handed alpha
Helix 9
9
A
240 259Right-handed alpha
Helix 10
10
A
267 274Right-handed alpha
Helix 11
11
A
287 298Right-handed alpha
Helix 12
12
A
312 325Right-handed alpha
Helix 13
13
A
345 363Right-handed alpha
Helix 14
14
A
381 384Right-handed 310
Helix 15
15
A
385 398Right-handed alpha
Helix 16
16
A
403 413Right-handed alpha
Helix 17
17
A
415 421Right-handed alpha
Helix 18
18
A
422 427Right-handed 310
Helix 19
19
A
439 447Right-handed alpha
Helix 20
20
A
454 458Right-handed 310
Helix 21
21
A
459 480Right-handed alpha
Helix 22
22
A
481 483Right-handed 310
Helix 23
23
A
484 514Right-handed alpha
Helix 24
24
A
516 526Right-handed alpha
Helix 25
25
A
526 550Right-handed alpha
Helix 26
26
A
554 581Right-handed alpha
Helix 27
27
A
587 592Right-handed 310
Helix 28
28
A
613 619Right-handed alpha
Helix 29
29
B
8 19Right-handed alpha
Helix 30
30
B
56 70Right-handed alpha
Helix 31
31
B
99 114Right-handed alpha
Helix 32
32
B
142 156Right-handed alpha
Helix 33
33
B
170 175Right-handed alpha
Helix 34
34
B
178 183Right-handed alpha
Helix 35
35
B
195 210Right-handed alpha
Helix 36
36
B
230 237Right-handed alpha
Helix 37
37
B
240 259Right-handed alpha
Helix 38
38
B
267 275Right-handed alpha
Helix 39
39
B
287 299Right-handed alpha
Helix 40
40
B
312 325Right-handed alpha
Helix 41
41
B
345 363Right-handed alpha
Helix 42
42
B
381 384Right-handed 310
Helix 43
43
B
385 399Right-handed alpha
Helix 44
44
B
403 413Right-handed alpha
Helix 45
45
B
415 421Right-handed alpha
Helix 46
46
B
422 427Right-handed 310
Helix 47
47
B
439 447Right-handed alpha
Helix 48
48
B
454 458Right-handed 310
Helix 49
49
B
459 480Right-handed alpha
Helix 50
50
B
481 483Right-handed 310
Helix 51
51
B
484 515Right-handed alpha
Helix 52
52
B
516 526Right-handed alpha
Helix 53
53
B
526 550Right-handed alpha
Helix 54
54
B
554 581Right-handed alpha
Helix 55
55
B
587 592Right-handed 310
Helix 56
56
B
613 619Right-handed alpha
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There are 6 sheets in PDB entry 5A6K. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
28 33parallel
Strand 3
A
47 52parallel
Strand 4
A
39 44anti-parallel
Strand 5
A
75 79anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 91first strand
Strand 2
A
367 372parallel
Strand 3
A
330 335parallel
Strand 4
A
301 306parallel
Strand 5
A
262 266parallel
Strand 6
A
216 218parallel
Strand 7
A
159 163parallel
Strand 8
A
117 121parallel
Strand 9
A
85 91parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
190 191anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
28 33parallel
Strand 3
B
47 52parallel
Strand 4
B
39 44anti-parallel
Strand 5
B
75 79anti-parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 91first strand
Strand 2
B
367 372parallel
Strand 3
B
330 335parallel
Strand 4
B
301 306parallel
Strand 5
B
262 266parallel
Strand 6
B
216 218parallel
Strand 7
B
159 164parallel
Strand 8
B
117 122parallel
Strand 9
B
85 91parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
190 191anti-parallel
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