Analysis of interatomic Contacts of Structural Units in PDB entry:
5A76

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A76 entry

There are 8 chains in PDB entry 5A76 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1029	LEU 1145
B	PRO 1028	GLN 1147
C	ALA 1029	LEU 1145
D	PRO 1028	LEU 1145
E	ALA 1029	GLN 1147
F	ALA 1029	THR 1146
G	ALA 1029	LEU 1145
H	ALA 1029	THR 1146

There are 32 helices in PDB entry 5A76. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1031	1043	Right-handed alpha
Helix 2	2	A	1044	1047	Right-handed 310
Helix 3	3	A	1065	1075	Right-handed alpha
Helix 4	4	A	1108	1126	Right-handed alpha
Helix 5	5	B	1031	1043	Right-handed alpha
Helix 6	6	B	1044	1047	Right-handed 310
Helix 7	7	B	1064	1075	Right-handed alpha
Helix 8	8	B	1108	1126	Right-handed alpha
Helix 9	9	C	1031	1042	Right-handed alpha
Helix 10	10	C	1043	1047	Right-handed 310
Helix 11	11	C	1064	1075	Right-handed alpha
Helix 12	12	C	1108	1126	Right-handed alpha
Helix 13	13	D	1031	1043	Right-handed alpha
Helix 14	14	D	1044	1047	Right-handed 310
Helix 15	15	D	1064	1075	Right-handed alpha
Helix 16	16	D	1108	1126	Right-handed alpha
Helix 17	17	E	1031	1043	Right-handed alpha
Helix 18	18	E	1044	1047	Right-handed 310
Helix 19	19	E	1064	1075	Right-handed alpha
Helix 20	20	E	1108	1126	Right-handed alpha
Helix 21	21	F	1031	1043	Right-handed alpha
Helix 22	22	F	1044	1047	Right-handed 310
Helix 23	23	F	1064	1075	Right-handed alpha
Helix 24	24	F	1108	1126	Right-handed alpha
Helix 25	25	G	1031	1043	Right-handed alpha
Helix 26	26	G	1044	1047	Right-handed 310
Helix 27	27	G	1064	1075	Right-handed alpha
Helix 28	28	G	1108	1126	Right-handed alpha
Helix 29	29	H	1031	1043	Right-handed alpha
Helix 30	30	H	1044	1047	Right-handed 310
Helix 31	31	H	1064	1075	Right-handed alpha
Helix 32	32	H	1108	1126	Right-handed alpha

There are 9 sheets in PDB entry 5A76. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, EA, GA, GB, HA, HB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1087	first strand
Strand 2	A	1100	1106	anti-parallel
Strand 3	A	1054	1062	anti-parallel
Strand 4	A	1133	1143	anti-parallel
Strand 5	B	1133	1143	anti-parallel
Strand 6	B	1054	1062	anti-parallel
Strand 7	B	1100	1106	anti-parallel
Strand 8	B	1086	1087	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1087	first strand
Strand 2	A	1100	1106	anti-parallel
Strand 3	A	1054	1062	anti-parallel
Strand 4	A	1133	1143	anti-parallel
Strand 5	B	1133	1143	anti-parallel
Strand 6	B	1054	1062	anti-parallel
Strand 7	B	1100	1106	anti-parallel
Strand 8	B	1080	1082	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1086	1087	first strand
Strand 2	B	1100	1106	parallel

Back to list of sheets
Back to top of page

There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1081	1087	first strand
Strand 2	C	1100	1106	anti-parallel
Strand 3	C	1054	1062	anti-parallel
Strand 4	C	1133	1143	anti-parallel
Strand 5	D	1133	1143	anti-parallel
Strand 6	D	1054	1062	anti-parallel
Strand 7	D	1100	1106	anti-parallel
Strand 8	D	1081	1087	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1080	1088	first strand
Strand 2	E	1099	1106	anti-parallel
Strand 3	E	1054	1062	anti-parallel
Strand 4	E	1133	1143	anti-parallel
Strand 5	F	1133	1143	anti-parallel
Strand 6	F	1054	1062	anti-parallel
Strand 7	F	1100	1106	anti-parallel
Strand 8	F	1080	1087	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1081	1082	first strand
Strand 2	G	1100	1106	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1086	1087	first strand
Strand 2	G	1100	1106	parallel

Back to list of sheets
Back to top of page

There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1080	1082	first strand
Strand 2	H	1100	1106	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1086	1087	first strand
Strand 2	H	1100	1106	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A76

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A76