Analysis of interatomic Contacts of Structural Units in PDB entry:
5A78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A78 entry

There are 4 chains in PDB entry 5A78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6VAL 162
B
 ASN 6SER 163
C
 T 501 A 524
D
 T 601 A 624
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5A78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 23Right-handed alpha
Helix 2
2
A
55 66Right-handed alpha
Helix 3
3
A
84 96Right-handed alpha
Helix 4
4
A
102 114Right-handed alpha
Helix 5
5
A
115 119Right-handed 310
Helix 6
6
A
121 137Right-handed alpha
Helix 7
7
A
147 158Right-handed alpha
Helix 8
8
B
6 23Right-handed alpha
Helix 9
9
B
55 66Right-handed alpha
Helix 10
10
B
84 96Right-handed alpha
Helix 11
11
B
102 116Right-handed alpha
Helix 12
12
B
117 119Right-handed 310
Helix 13
13
B
121 138Right-handed alpha
Helix 14
14
B
147 158Right-handed alpha
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There are 2 sheets in PDB entry 5A78. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 32first strand
Strand 2
A
40 51anti-parallel
Strand 3
A
77 83anti-parallel
Strand 4
A
69 72anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 32first strand
Strand 2
B
40 51anti-parallel
Strand 3
B
77 83anti-parallel
Strand 4
B
69 72anti-parallel
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