Analysis of interatomic Contacts of Structural Units in PDB entry:
5A7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A7J entry

There are 2 chains in PDB entry 5A7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 258HIS 566
B
 MET 258HIS 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5A7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
283 288Right-handed alpha
Helix 2
2
A
307 312Right-handed alpha
Helix 3
3
A
316 330Right-handed alpha
Helix 4
4
A
356 359Right-handed 310
Helix 5
5
A
372 376Right-handed 310
Helix 6
6
A
407 422Right-handed alpha
Helix 7
7
A
456 466Right-handed alpha
Helix 8
8
A
468 474Right-handed alpha
Helix 9
9
A
476 484Right-handed alpha
Helix 10
10
B
283 288Right-handed alpha
Helix 11
11
B
307 312Right-handed alpha
Helix 12
12
B
317 330Right-handed alpha
Helix 13
13
B
356 359Right-handed 310
Helix 14
14
B
372 376Right-handed 310
Helix 15
15
B
407 422Right-handed alpha
Helix 16
16
B
456 466Right-handed alpha
Helix 17
17
B
468 474Right-handed alpha
Helix 18
18
B
476 484Right-handed alpha
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There are 6 sheets in PDB entry 5A7J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 344first strand
Strand 2
A
347 354anti-parallel
Strand 3
A
296 302anti-parallel
Strand 4
A
259 273parallel
Strand 5
A
552 564anti-parallel
Strand 6
A
533 540anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 370first strand
Strand 2
A
381 389anti-parallel
Strand 3
A
392 400anti-parallel
Strand 4
A
441 447parallel
Strand 5
A
527 530anti-parallel
Strand 6
A
492 493anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
434 435anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 344first strand
Strand 2
B
347 354anti-parallel
Strand 3
B
296 302anti-parallel
Strand 4
B
259 273parallel
Strand 5
B
552 564anti-parallel
Strand 6
B
533 540anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 370first strand
Strand 2
B
381 389anti-parallel
Strand 3
B
392 400anti-parallel
Strand 4
B
441 447parallel
Strand 5
B
527 530anti-parallel
Strand 6
B
492 493anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 424first strand
Strand 2
B
434 435anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il