Analysis of interatomic Contacts of Structural Units in PDB entry:
5A7V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A7V entry

There are 2 chains in PDB entry 5A7V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 17ALA 384
B
 LYS 26ALA 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5A7V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
131 136Right-handed alpha
Helix 3
3
A
187 192Right-handed alpha
Helix 4
4
A
330 335Right-handed alpha
Helix 5
5
B
131 136Right-handed alpha
Helix 6
6
B
187 192Right-handed alpha
Helix 7
7
B
330 335Right-handed alpha
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There are 16 sheets in PDB entry 5A7V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
63 65anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 80first strand
Strand 2
A
83 91anti-parallel
Strand 3
A
103 110anti-parallel
Strand 4
A
117 118anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 147first strand
Strand 2
A
153 160anti-parallel
Strand 3
A
165 172anti-parallel
Strand 4
A
179 183anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
201 208anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
231 235anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
201 208anti-parallel
Strand 5
A
211 214anti-parallel
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There are 8 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
231 235anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
201 208anti-parallel
Strand 5
A
273 276parallel
Strand 6
A
279 287anti-parallel
Strand 7
A
302 310anti-parallel
Strand 8
A
313 320anti-parallel
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There are 7 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
231 235anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
201 208anti-parallel
Strand 5
A
273 276parallel
Strand 6
A
279 287anti-parallel
Strand 7
A
267 269parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 351first strand
Strand 2
A
354 361anti-parallel
Strand 3
A
365 371anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
63 65anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 80first strand
Strand 2
B
83 91anti-parallel
Strand 3
B
103 110anti-parallel
Strand 4
B
117 118anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 147first strand
Strand 2
B
153 160anti-parallel
Strand 3
B
165 172anti-parallel
Strand 4
B
179 183anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 214first strand
Strand 2
B
201 208anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
231 235anti-parallel
Strand 3
B
221 225anti-parallel
Strand 4
B
201 208anti-parallel
Strand 5
B
211 214anti-parallel
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There are 8 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
231 235anti-parallel
Strand 3
B
221 225anti-parallel
Strand 4
B
201 208anti-parallel
Strand 5
B
273 276parallel
Strand 6
B
279 287anti-parallel
Strand 7
B
302 310anti-parallel
Strand 8
B
313 320anti-parallel
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There are 7 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
231 235anti-parallel
Strand 3
B
221 225anti-parallel
Strand 4
B
201 208anti-parallel
Strand 5
B
273 276parallel
Strand 6
B
279 287anti-parallel
Strand 7
B
267 269parallel
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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 351first strand
Strand 2
B
354 361anti-parallel
Strand 3
B
365 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il