Analysis of interatomic Contacts of Structural Units in PDB entry:
5A88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A88 entry

There are 4 chains in PDB entry 5A88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 185	GLU 337
B	HIS 186	ALA 336
C	HIS 186	GLU 337
D	HIS 186	ALA 336

There are 7 helices in PDB entry 5A88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	201	205	Right-handed 310
Helix 2	2	A	299	324	Right-handed alpha
Helix 3	3	A	328	330	Right-handed 310
Helix 4	4	B	299	323	Right-handed alpha
Helix 5	5	C	201	205	Right-handed 310
Helix 6	6	C	299	322	Right-handed alpha
Helix 7	7	D	299	325	Right-handed alpha

There are 10 sheets in PDB entry 5A88. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, A, DB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	282	293	anti-parallel
Strand 3	A	223	231	anti-parallel
Strand 4	A	247	256	anti-parallel
Strand 5	A	265	271	anti-parallel
Strand 6	A	209	213	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	282	293	anti-parallel
Strand 3	A	223	231	anti-parallel
Strand 4	A	247	256	anti-parallel
Strand 5	A	332	333	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	276	277	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	192	first strand
Strand 2	B	282	292	anti-parallel
Strand 3	B	223	231	anti-parallel
Strand 4	B	247	255	anti-parallel
Strand 5	B	265	271	anti-parallel
Strand 6	B	209	213	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	192	first strand
Strand 2	B	282	292	anti-parallel
Strand 3	B	223	231	anti-parallel
Strand 4	B	247	255	anti-parallel
Strand 5	B	332	333	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	240	first strand
Strand 2	B	276	277	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	192	first strand
Strand 2	C	282	293	anti-parallel
Strand 3	C	223	231	anti-parallel
Strand 4	C	247	256	anti-parallel
Strand 5	C	265	271	anti-parallel
Strand 6	C	209	213	anti-parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	192	first strand
Strand 2	C	282	293	anti-parallel
Strand 3	C	223	231	anti-parallel
Strand 4	C	247	256	anti-parallel
Strand 5	C	332	333	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	192	first strand
Strand 2	D	282	293	anti-parallel
Strand 3	D	223	231	anti-parallel
Strand 4	D	247	256	anti-parallel
Strand 5	D	265	271	anti-parallel
Strand 6	D	209	213	anti-parallel

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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	192	first strand
Strand 2	D	282	293	anti-parallel
Strand 3	D	223	231	anti-parallel
Strand 4	D	247	256	anti-parallel
Strand 5	D	332	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A88

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A88