Analysis of interatomic Contacts of Structural Units in PDB entry:
5A89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A89 entry

There are 2 chains in PDB entry 5A89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 186ALA 336
B
 HIS 186SER 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5A89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
199 205Right-handed alpha
Helix 2
2
A
299 325Right-handed alpha
Helix 3
3
A
328 330Right-handed 310
Helix 4
4
B
199 205Right-handed alpha
Helix 5
5
B
299 326Right-handed alpha
Helix 6
6
B
328 330Right-handed 310
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There are 5 sheets in PDB entry 5A89. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
282 292anti-parallel
Strand 3
A
223 231anti-parallel
Strand 4
A
247 255anti-parallel
Strand 5
A
266 271anti-parallel
Strand 6
A
209 212anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
282 292anti-parallel
Strand 3
A
223 231anti-parallel
Strand 4
A
247 255anti-parallel
Strand 5
A
332 333anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
282 293anti-parallel
Strand 3
B
223 231anti-parallel
Strand 4
B
247 255anti-parallel
Strand 5
B
266 271anti-parallel
Strand 6
B
209 211anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
282 293anti-parallel
Strand 3
B
223 231anti-parallel
Strand 4
B
247 255anti-parallel
Strand 5
B
332 333anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 240first strand
Strand 2
B
276 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il