Analysis of interatomic Contacts of Structural Units in PDB entry:
5A8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A8B entry

There are 4 chains in PDB entry 5A8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 239GLU 370
B
 SER 240GLU 370
C
 PRO -6GLU 370
D
 SER 240GLU 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5A8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
240 248Right-handed alpha
Helix 2
2
A
268 276Right-handed alpha
Helix 3
3
A
278 283Right-handed alpha
Helix 4
4
A
286 291Right-handed 310
Helix 5
5
A
296 310Right-handed alpha
Helix 6
6
A
354 370Right-handed alpha
Helix 7
7
B
240 248Right-handed alpha
Helix 8
8
B
268 276Right-handed alpha
Helix 9
9
B
278 283Right-handed alpha
Helix 10
10
B
286 291Right-handed 310
Helix 11
11
B
296 310Right-handed alpha
Helix 12
12
B
354 367Right-handed alpha
Helix 13
13
C
-3 248Right-handed alpha
Helix 14
14
C
268 276Right-handed alpha
Helix 15
15
C
278 283Right-handed alpha
Helix 16
16
C
286 291Right-handed 310
Helix 17
17
C
296 310Right-handed alpha
Helix 18
18
C
354 367Right-handed alpha
Helix 19
19
D
240 248Right-handed alpha
Helix 20
20
D
268 276Right-handed alpha
Helix 21
21
D
278 283Right-handed alpha
Helix 22
22
D
286 291Right-handed 310
Helix 23
23
D
296 310Right-handed alpha
Helix 24
24
D
354 368Right-handed alpha
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There are 4 sheets in PDB entry 5A8B. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
252 255anti-parallel
Strand 3
A
343 353anti-parallel
Strand 4
A
326 337anti-parallel
Strand 5
A
313 320anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
252 255anti-parallel
Strand 3
B
343 353anti-parallel
Strand 4
B
326 337anti-parallel
Strand 5
B
313 320anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
264 267first strand
Strand 2
C
252 255anti-parallel
Strand 3
C
343 353anti-parallel
Strand 4
C
326 337anti-parallel
Strand 5
C
313 320anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
264 267first strand
Strand 2
D
252 255anti-parallel
Strand 3
D
343 353anti-parallel
Strand 4
D
326 337anti-parallel
Strand 5
D
313 320anti-parallel
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