Analysis of interatomic Contacts of Structural Units in PDB entry:
5A8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A8G entry

There are 4 chains in PDB entry 5A8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3VAL 164
A
 TYR 166LEU 293
B
 LYS 3VAL 164
B
 TYR 166LEU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5A8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 37Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
51 55Right-handed 310
Helix 4
4
A
56 70Right-handed alpha
Helix 5
5
A
85 100Right-handed alpha
Helix 6
6
A
115 131Right-handed alpha
Helix 7
7
A
139 144Right-handed alpha
Helix 8
8
A
148 157Right-handed alpha
Helix 9
9
A
170 181Right-handed alpha
Helix 10
10
A
190 192Right-handed 310
Helix 11
11
A
193 200Right-handed alpha
Helix 12
12
A
209 227Right-handed alpha
Helix 13
13
A
228 250Right-handed alpha
Helix 14
14
A
250 262Right-handed alpha
Helix 15
15
A
277 279Right-handed 310
Helix 16
16
A
280 292Right-handed alpha
Helix 17
17
B
23 37Right-handed alpha
Helix 18
18
B
47 51Right-handed 310
Helix 19
19
B
51 55Right-handed 310
Helix 20
20
B
56 71Right-handed alpha
Helix 21
21
B
85 100Right-handed alpha
Helix 22
22
B
115 131Right-handed alpha
Helix 23
23
B
139 144Right-handed alpha
Helix 24
24
B
148 157Right-handed alpha
Helix 25
25
B
170 181Right-handed alpha
Helix 26
26
B
190 192Right-handed 310
Helix 27
27
B
193 200Right-handed alpha
Helix 28
28
B
209 227Right-handed alpha
Helix 29
29
B
228 250Right-handed alpha
Helix 30
30
B
250 262Right-handed alpha
Helix 31
31
B
277 279Right-handed 310
Helix 32
32
B
280 292Right-handed alpha
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There are 2 sheets in PDB entry 5A8G. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
204 207parallel
Strand 3
A
185 188parallel
Strand 4
A
161 164parallel
Strand 5
A
134 137parallel
Strand 6
A
103 107parallel
Strand 7
A
76 80parallel
Strand 8
A
42 45parallel
Strand 9
A
7 11parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
204 207parallel
Strand 3
B
185 188parallel
Strand 4
B
161 164parallel
Strand 5
B
134 137parallel
Strand 6
B
103 107parallel
Strand 7
B
76 80parallel
Strand 8
B
42 45parallel
Strand 9
B
7 11parallel
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