Analysis of interatomic Contacts of Structural Units in PDB entry:
5A8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A8J entry

There is 1 chain in PDB entry 5A8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5A8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 54Right-handed alpha
Helix 2
2
A
56 72Right-handed alpha
Helix 3
3
A
111 123Right-handed alpha
Helix 4
4
A
145 150Right-handed 310
Helix 5
5
A
170 181Right-handed alpha
Helix 6
6
A
190 192Right-handed 310
Helix 7
7
A
193 200Right-handed alpha
Helix 8
8
A
281 289Right-handed alpha
Helix 9
9
A
290 312Right-handed alpha
Helix 10
10
A
314 333Right-handed alpha
Helix 11
11
A
334 342Right-handed alpha
Helix 12
12
A
347 360Right-handed alpha
Helix 13
13
A
361 364Right-handed 310
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There are 4 sheets in PDB entry 5A8J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
21 31anti-parallel
Strand 3
A
237 245anti-parallel
Strand 4
A
219 221anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
268 279parallel
Strand 3
A
252 262anti-parallel
Strand 4
A
208 215anti-parallel
Strand 5
A
228 233anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
205 206anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 94first strand
Strand 2
A
77 83anti-parallel
Strand 3
A
41 47parallel
Strand 4
A
130 136parallel
Strand 5
A
158 165parallel
Strand 6
A
185 188parallel
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