Analysis of interatomic Contacts of Structural Units in PDB entry:
5A8K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A8K entry

There are 9 chains in PDB entry 5A8K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 256
A	ALA 258	ARG 270
A	ALA 272	SER 399
A	ARG 401	TYR 444
A	TYR 446	GLN 451
A	GLY 453	ALA 549
B	ALA 2	ILE 443
C	ALA 2	GLU 249
D	ALA 2	TRP 31

There are148 helices in PDB entry 5A8K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	14	Right-handed alpha
Helix 2	2	A	29	33	Right-handed 310
Helix 3	3	A	34	52	Right-handed alpha
Helix 4	4	A	84	90	Right-handed 310
Helix 5	5	A	91	103	Right-handed alpha
Helix 6	6	A	109	119	Right-handed alpha
Helix 7	7	A	125	140	Right-handed alpha
Helix 8	8	A	154	159	Right-handed 310
Helix 9	9	A	169	176	Right-handed alpha
Helix 10	10	A	177	180	Right-handed 310
Helix 11	11	A	183	188	Right-handed alpha
Helix 12	12	A	189	201	Right-handed alpha
Helix 13	13	A	211	218	Right-handed alpha
Helix 14	14	A	221	240	Right-handed alpha
Helix 15	15	A	245	257	Right-handed alpha
Helix 16	16	A	268	272	Right-handed 310
Helix 17	17	A	277	281	Right-handed 310
Helix 18	18	A	282	290	Right-handed alpha
Helix 19	19	A	291	296	Right-handed alpha
Helix 20	20	A	299	317	Right-handed alpha
Helix 21	21	A	318	324	Right-handed alpha
Helix 22	22	A	330	336	Right-handed alpha
Helix 23	23	A	341	358	Right-handed alpha
Helix 24	24	A	366	388	Right-handed alpha
Helix 25	25	A	388	395	Right-handed alpha
Helix 26	26	A	397	418	Right-handed alpha
Helix 27	27	A	419	439	Right-handed alpha
Helix 28	28	A	447	452	Right-handed alpha
Helix 29	29	A	452	458	Right-handed alpha
Helix 30	30	A	467	471	Right-handed 310
Helix 31	31	A	475	479	Right-handed 310
Helix 32	32	A	484	500	Right-handed alpha
Helix 33	33	A	506	513	Right-handed alpha
Helix 34	34	A	524	534	Right-handed alpha
Helix 35	35	A	543	547	Right-handed 310
Helix 36	36	B	25	28	Right-handed 310
Helix 37	37	B	32	44	Right-handed alpha
Helix 38	38	B	50	60	Right-handed alpha
Helix 39	39	B	78	80	Right-handed 310
Helix 40	40	B	81	94	Right-handed alpha
Helix 41	41	B	117	123	Right-handed alpha
Helix 42	42	B	128	147	Right-handed alpha
Helix 43	43	B	152	162	Right-handed alpha
Helix 44	44	B	181	185	Right-handed 310
Helix 45	45	B	190	194	Right-handed 310
Helix 46	46	B	196	204	Right-handed alpha
Helix 47	47	B	207	226	Right-handed alpha
Helix 48	48	B	230	232	Right-handed 310
Helix 49	49	B	233	246	Right-handed alpha
Helix 50	50	B	247	249	Right-handed 310
Helix 51	51	B	250	260	Right-handed alpha
Helix 52	52	B	264	279	Right-handed alpha
Helix 53	53	B	298	322	Right-handed alpha
Helix 54	54	B	323	325	Right-handed 310
Helix 55	55	B	326	343	Right-handed alpha
Helix 56	56	B	346	349	Right-handed 310
Helix 57	57	B	350	362	Right-handed alpha
Helix 58	58	B	371	375	Right-handed 310
Helix 59	59	B	389	400	Right-handed alpha
Helix 60	60	B	407	412	Right-handed alpha
Helix 61	61	B	412	420	Right-handed alpha
Helix 62	62	B	422	427	Right-handed alpha
Helix 63	63	B	427	440	Right-handed alpha
Helix 64	64	B	441	443	Right-handed 310
Helix 65	65	C	9	20	Right-handed alpha
Helix 66	66	C	32	41	Right-handed alpha
Helix 67	67	C	55	59	Right-handed 310
Helix 68	68	C	64	70	Right-handed alpha
Helix 69	69	C	73	78	Right-handed alpha
Helix 70	70	C	97	109	Right-handed alpha
Helix 71	71	C	127	140	Right-handed alpha
Helix 72	72	C	206	214	Right-handed alpha
Helix 73	73	C	223	226	Right-handed 310
Helix 74	74	C	227	247	Right-handed alpha
Helix 75	75	D	6	14	Right-handed alpha
Helix 76	76	D	29	33	Right-handed 310
Helix 77	77	D	34	52	Right-handed alpha
Helix 78	78	D	84	90	Right-handed 310
Helix 79	79	D	91	103	Right-handed alpha
Helix 80	80	D	109	119	Right-handed alpha
Helix 81	81	D	125	140	Right-handed alpha
Helix 82	82	D	154	159	Right-handed 310
Helix 83	83	D	169	176	Right-handed alpha
Helix 84	84	D	177	180	Right-handed 310
Helix 85	85	D	183	188	Right-handed alpha
Helix 86	86	D	189	201	Right-handed alpha
Helix 87	87	D	211	218	Right-handed alpha
Helix 88	88	D	221	239	Right-handed alpha
Helix 89	89	D	247	257	Right-handed alpha
Helix 90	90	D	268	272	Right-handed 310
Helix 91	91	D	277	281	Right-handed 310
Helix 92	92	D	282	290	Right-handed alpha
Helix 93	93	D	291	295	Right-handed 310
Helix 94	94	D	299	317	Right-handed alpha
Helix 95	95	D	318	324	Right-handed alpha
Helix 96	96	D	330	336	Right-handed alpha
Helix 97	97	D	341	358	Right-handed alpha
Helix 98	98	D	366	388	Right-handed alpha
Helix 99	99	D	388	395	Right-handed alpha
Helix 100	100	D	397	418	Right-handed alpha
Helix 101	101	D	419	439	Right-handed alpha
Helix 102	102	D	447	452	Right-handed alpha
Helix 103	103	D	452	458	Right-handed alpha
Helix 104	104	D	467	471	Right-handed 310
Helix 105	105	D	475	479	Right-handed 310
Helix 106	106	D	484	500	Right-handed alpha
Helix 107	107	D	506	513	Right-handed alpha
Helix 108	108	D	524	534	Right-handed alpha
Helix 109	109	D	543	547	Right-handed 310
Helix 110	110	E	25	28	Right-handed 310
Helix 111	111	E	32	44	Right-handed alpha
Helix 112	112	E	50	60	Right-handed alpha
Helix 113	113	E	78	80	Right-handed 310
Helix 114	114	E	81	94	Right-handed alpha
Helix 115	115	E	117	123	Right-handed alpha
Helix 116	116	E	128	147	Right-handed alpha
Helix 117	117	E	152	162	Right-handed alpha
Helix 118	118	E	181	185	Right-handed 310
Helix 119	119	E	190	194	Right-handed 310
Helix 120	120	E	196	204	Right-handed alpha
Helix 121	121	E	207	226	Right-handed alpha
Helix 122	122	E	230	232	Right-handed 310
Helix 123	123	E	233	246	Right-handed alpha
Helix 124	124	E	247	249	Right-handed 310
Helix 125	125	E	250	260	Right-handed alpha
Helix 126	126	E	264	279	Right-handed alpha
Helix 127	127	E	298	322	Right-handed alpha
Helix 128	128	E	323	325	Right-handed 310
Helix 129	129	E	326	343	Right-handed alpha
Helix 130	130	E	346	349	Right-handed 310
Helix 131	131	E	350	362	Right-handed alpha
Helix 132	132	E	371	375	Right-handed 310
Helix 133	133	E	389	399	Right-handed alpha
Helix 134	134	E	407	412	Right-handed alpha
Helix 135	135	E	412	420	Right-handed alpha
Helix 136	136	E	422	427	Right-handed alpha
Helix 137	137	E	427	440	Right-handed alpha
Helix 138	138	E	441	443	Right-handed 310
Helix 139	139	F	9	20	Right-handed alpha
Helix 140	140	F	32	41	Right-handed alpha
Helix 141	141	F	55	59	Right-handed 310
Helix 142	142	F	64	70	Right-handed alpha
Helix 143	143	F	73	78	Right-handed alpha
Helix 144	144	F	97	109	Right-handed alpha
Helix 145	145	F	127	140	Right-handed alpha
Helix 146	146	F	206	214	Right-handed alpha
Helix 147	147	F	223	226	Right-handed 310
Helix 148	148	F	227	247	Right-handed alpha

There are 14 sheets in PDB entry 5A8K. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, CA, CB, A, DB, EA, EB, EC, FA, FB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	80	82	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	167	first strand
Strand 2	A	204	209	anti-parallel
Strand 3	A	104	108	anti-parallel
Strand 4	A	260	261	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	17	23	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	106	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	45	49	anti-parallel
Strand 4	B	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	288	first strand
Strand 2	B	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	121	126	anti-parallel
Strand 3	C	82	89	anti-parallel
Strand 4	C	148	150	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	184	188	anti-parallel
Strand 3	C	194	202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	73	first strand
Strand 2	D	80	82	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	167	first strand
Strand 2	D	204	209	anti-parallel
Strand 3	D	104	108	anti-parallel
Strand 4	D	260	261	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	17	23	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	106	first strand
Strand 2	E	111	115	anti-parallel
Strand 3	E	45	49	anti-parallel
Strand 4	E	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	288	first strand
Strand 2	E	291	295	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	116	first strand
Strand 2	F	121	126	anti-parallel
Strand 3	F	82	89	anti-parallel
Strand 4	F	148	150	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	178	first strand
Strand 2	F	183	188	anti-parallel
Strand 3	F	194	202	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A8K

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A8K