Analysis of interatomic Contacts of Structural Units in PDB entry:
5A8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A8L entry

There are 9 chains in PDB entry 5A8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 U 1573 G 4572
B
 U 612 C 1828
D
 PRO 123PRO 143
G
 PRO 7ASP 144
H
 ARG 78GLN 89
P
 G 28 A 76
Q
 ALA 7TYR 437
R
 C 1 A 9
Z
 MET 1PRO 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5A8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
132 134Right-handed 310
Helix 2
2
G
44 51Right-handed alpha
Helix 3
3
G
78 84Right-handed 310
Helix 4
4
G
109 114Right-handed alpha
Helix 5
5
G
115 119Right-handed 310
Helix 6
6
G
127 132Right-handed alpha
Helix 7
7
G
133 139Right-handed 310
Helix 8
8
Q
7 27Right-handed alpha
Helix 9
9
Q
44 59Right-handed alpha
Helix 10
10
Q
65 83Right-handed alpha
Helix 11
11
Q
133 141Right-handed alpha
Helix 12
12
Q
186 213Right-handed alpha
Helix 13
13
Q
231 238Right-handed alpha
Helix 14
14
Q
245 250Right-handed 310
Helix 15
15
Q
259 296Right-handed alpha
Helix 16
16
Q
306 314Right-handed alpha
Helix 17
17
Q
347 354Right-handed alpha
Helix 18
18
Q
355 357Right-handed 310
Helix 19
19
Q
373 380Right-handed alpha
Helix 20
20
Q
396 405Right-handed alpha
Helix 21
21
Q
421 436Right-handed alpha
Helix 22
22
Z
10 20Right-handed alpha
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There are 6 sheets in PDB entry 5A8L. Click on sheet of interest to get list of strands forming it: A, QA, QB, QC, QD, QE,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 130first strand
Strand 2
D
136 138anti-parallel
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There are 3 strands in QA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
35 39first strand
Strand 2
Q
93 98anti-parallel
Strand 3
Q
110 113anti-parallel
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There are 2 strands in QB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
101 102first strand
Strand 2
Q
106 107anti-parallel
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There are 3 strands in QC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
148 151first strand
Strand 2
Q
156 160anti-parallel
Strand 3
Q
167 171anti-parallel
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There are 4 strands in QD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
302 303first strand
Strand 2
Q
409 412anti-parallel
Strand 3
Q
319 323anti-parallel
Strand 4
Q
391 392parallel
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There are 2 strands in QE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
332 334first strand
Strand 2
Q
341 343anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il