Analysis of interatomic Contacts of Structural Units in PDB entry:
5A8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A8M entry

There are 3 chains in PDB entry 5A8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28LYS 364
B
 ASN 29ARG 365
C
 SER 28LYS 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5A8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 34Right-handed 310
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
75 82Right-handed alpha
Helix 4
4
A
86 97Right-handed alpha
Helix 5
5
A
107 115Right-handed alpha
Helix 6
6
A
115 134Right-handed alpha
Helix 7
7
A
147 150Right-handed 310
Helix 8
8
A
154 158Right-handed 310
Helix 9
9
A
160 175Right-handed alpha
Helix 10
10
A
201 220Right-handed alpha
Helix 11
11
A
229 234Right-handed alpha
Helix 12
12
A
236 241Right-handed 310
Helix 13
13
A
266 278Right-handed alpha
Helix 14
14
A
279 284Right-handed 310
Helix 15
15
A
311 324Right-handed alpha
Helix 16
16
A
349 364Right-handed alpha
Helix 17
17
B
30 34Right-handed 310
Helix 18
18
B
41 45Right-handed 310
Helix 19
19
B
75 82Right-handed alpha
Helix 20
20
B
86 97Right-handed alpha
Helix 21
21
B
107 115Right-handed alpha
Helix 22
22
B
115 134Right-handed alpha
Helix 23
23
B
147 150Right-handed 310
Helix 24
24
B
154 158Right-handed 310
Helix 25
25
B
160 175Right-handed alpha
Helix 26
26
B
201 220Right-handed alpha
Helix 27
27
B
229 234Right-handed alpha
Helix 28
28
B
236 241Right-handed 310
Helix 29
29
B
266 278Right-handed alpha
Helix 30
30
B
279 284Right-handed 310
Helix 31
31
B
311 324Right-handed alpha
Helix 32
32
B
349 364Right-handed alpha
Helix 33
33
C
30 34Right-handed 310
Helix 34
34
C
41 45Right-handed 310
Helix 35
35
C
75 82Right-handed alpha
Helix 36
36
C
86 97Right-handed alpha
Helix 37
37
C
107 115Right-handed alpha
Helix 38
38
C
115 134Right-handed alpha
Helix 39
39
C
154 158Right-handed 310
Helix 40
40
C
160 175Right-handed alpha
Helix 41
41
C
201 218Right-handed alpha
Helix 42
42
C
229 234Right-handed alpha
Helix 43
43
C
236 241Right-handed 310
Helix 44
44
C
266 278Right-handed alpha
Helix 45
45
C
279 284Right-handed 310
Helix 46
46
C
311 324Right-handed alpha
Helix 47
47
C
349 364Right-handed alpha
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There are 9 sheets in PDB entry 5A8M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
65 66anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
326 329parallel
Strand 3
A
287 289parallel
Strand 4
A
250 252parallel
Strand 5
A
224 227parallel
Strand 6
A
181 185parallel
Strand 7
A
136 141parallel
Strand 8
A
101 106parallel
Strand 9
A
69 72parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
189 190parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
57 60anti-parallel
Strand 3
B
65 66anti-parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
326 329parallel
Strand 3
B
287 289parallel
Strand 4
B
250 252parallel
Strand 5
B
224 227parallel
Strand 6
B
181 185parallel
Strand 7
B
136 141parallel
Strand 8
B
101 106parallel
Strand 9
B
69 72parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
144 146anti-parallel
Strand 3
B
189 190parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 54first strand
Strand 2
C
57 60anti-parallel
Strand 3
C
65 66anti-parallel
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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
326 329parallel
Strand 3
C
287 289parallel
Strand 4
C
250 252parallel
Strand 5
C
224 227parallel
Strand 6
C
181 185parallel
Strand 7
C
136 141parallel
Strand 8
C
101 106parallel
Strand 9
C
69 72parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 152first strand
Strand 2
C
144 146anti-parallel
Strand 3
C
189 190parallel
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