Analysis of interatomic Contacts of Structural Units in PDB entry:
5A8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A8O entry

There is 1 chain in PDB entry 5A8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29LYS 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5A8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 34Right-handed 310
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
75 82Right-handed alpha
Helix 4
4
A
86 97Right-handed alpha
Helix 5
5
A
107 115Right-handed alpha
Helix 6
6
A
115 133Right-handed alpha
Helix 7
7
A
154 158Right-handed 310
Helix 8
8
A
160 175Right-handed alpha
Helix 9
9
A
201 218Right-handed alpha
Helix 10
10
A
229 234Right-handed alpha
Helix 11
11
A
236 241Right-handed 310
Helix 12
12
A
266 278Right-handed alpha
Helix 13
13
A
279 284Right-handed 310
Helix 14
14
A
311 324Right-handed alpha
Helix 15
15
A
349 364Right-handed alpha
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There are 3 sheets in PDB entry 5A8O. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
65 66anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
326 329parallel
Strand 3
A
287 289parallel
Strand 4
A
250 252parallel
Strand 5
A
224 227parallel
Strand 6
A
181 185parallel
Strand 7
A
136 141parallel
Strand 8
A
101 106parallel
Strand 9
A
69 72parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
144 146anti-parallel
Strand 3
A
189 190parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il