Analysis of interatomic Contacts of Structural Units in PDB entry:
5A9D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5A9D entry

There are 2 chains in PDB entry 5A9D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 391	THR 579
B	GLY 391	THR 579

There are 2 helices in PDB entry 5A9D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	433	435	Right-handed 310
Helix 2	2	B	433	435	Right-handed 310

There are 20 sheets in PDB entry 5A9D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	423	first strand
Strand 2	A	394	401	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	394	401	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	478	first strand
Strand 2	A	459	466	anti-parallel
Strand 3	A	394	401	parallel
Strand 4	A	422	423	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	478	first strand
Strand 2	A	459	466	anti-parallel
Strand 3	A	394	401	parallel
Strand 4	A	428	431	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	418	first strand
Strand 2	A	407	411	anti-parallel
Strand 3	A	439	442	anti-parallel
Strand 4	A	448	450	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	516	first strand
Strand 2	A	487	493	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	487	493	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	574	first strand
Strand 2	A	554	561	anti-parallel
Strand 3	A	487	493	parallel
Strand 4	A	515	516	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	574	first strand
Strand 2	A	554	561	anti-parallel
Strand 3	A	487	493	parallel
Strand 4	A	520	522	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	511	first strand
Strand 2	A	499	503	anti-parallel
Strand 3	A	528	532	anti-parallel
Strand 4	A	543	545	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	423	first strand
Strand 2	B	394	401	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	431	first strand
Strand 2	B	394	401	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	478	first strand
Strand 2	B	459	466	anti-parallel
Strand 3	B	394	401	parallel
Strand 4	B	422	423	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	478	first strand
Strand 2	B	459	466	anti-parallel
Strand 3	B	394	401	parallel
Strand 4	B	428	431	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	418	first strand
Strand 2	B	407	411	anti-parallel
Strand 3	B	439	442	anti-parallel
Strand 4	B	448	450	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	516	first strand
Strand 2	B	487	493	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	487	493	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	574	first strand
Strand 2	B	554	561	anti-parallel
Strand 3	B	487	493	parallel
Strand 4	B	515	516	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	574	first strand
Strand 2	B	554	561	anti-parallel
Strand 3	B	487	493	parallel
Strand 4	B	520	522	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	511	first strand
Strand 2	B	499	503	anti-parallel
Strand 3	B	528	532	anti-parallel
Strand 4	B	543	545	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5A9D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5A9D