Analysis of interatomic Contacts of Structural Units in PDB entry:
5A9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A9K entry

There are 6 chains in PDB entry 5A9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 301ASP 579
B
 THR 301ILE 578
C
 THR 301ILE 578
D
 THR 301ASP 579
E
 THR 301ILE 578
F
 THR 301ASP 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 88 helices in PDB entry 5A9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
312 323Right-handed alpha
Helix 2
2
A
327 338Right-handed alpha
Helix 3
3
A
342 349Right-handed alpha
Helix 4
4
A
353 376Right-handed alpha
Helix 5
5
A
377 389Right-handed alpha
Helix 6
6
A
395 405Right-handed alpha
Helix 7
7
A
408 422Right-handed alpha
Helix 8
8
A
438 451Right-handed alpha
Helix 9
9
A
456 460Right-handed 310
Helix 10
10
A
462 470Right-handed 310
Helix 11
11
A
481 491Right-handed alpha
Helix 12
12
A
493 498Right-handed 310
Helix 13
13
A
529 536Right-handed 310
Helix 14
14
A
560 571Right-handed alpha
Helix 15
15
B
312 323Right-handed alpha
Helix 16
16
B
327 339Right-handed alpha
Helix 17
17
B
342 349Right-handed alpha
Helix 18
18
B
353 376Right-handed alpha
Helix 19
19
B
377 389Right-handed alpha
Helix 20
20
B
394 405Right-handed alpha
Helix 21
21
B
408 422Right-handed alpha
Helix 22
22
B
438 451Right-handed alpha
Helix 23
23
B
456 460Right-handed 310
Helix 24
24
B
466 471Right-handed 310
Helix 25
25
B
481 492Right-handed alpha
Helix 26
26
B
492 498Right-handed alpha
Helix 27
27
B
529 536Right-handed 310
Helix 28
28
B
560 571Right-handed alpha
Helix 29
29
C
312 323Right-handed alpha
Helix 30
30
C
327 339Right-handed alpha
Helix 31
31
C
342 351Right-handed alpha
Helix 32
32
C
353 376Right-handed alpha
Helix 33
33
C
377 389Right-handed alpha
Helix 34
34
C
394 405Right-handed alpha
Helix 35
35
C
408 422Right-handed alpha
Helix 36
36
C
438 451Right-handed alpha
Helix 37
37
C
456 460Right-handed 310
Helix 38
38
C
466 471Right-handed 310
Helix 39
39
C
481 492Right-handed alpha
Helix 40
40
C
492 498Right-handed alpha
Helix 41
41
C
525 529Right-handed 310
Helix 42
42
C
529 539Right-handed 310
Helix 43
43
C
560 571Right-handed alpha
Helix 44
44
C
572 576Right-handed 310
Helix 45
45
D
312 323Right-handed alpha
Helix 46
46
D
327 339Right-handed alpha
Helix 47
47
D
342 349Right-handed alpha
Helix 48
48
D
353 376Right-handed alpha
Helix 49
49
D
377 389Right-handed alpha
Helix 50
50
D
394 405Right-handed alpha
Helix 51
51
D
408 422Right-handed alpha
Helix 52
52
D
438 451Right-handed alpha
Helix 53
53
D
456 460Right-handed 310
Helix 54
54
D
462 471Right-handed 310
Helix 55
55
D
481 492Right-handed alpha
Helix 56
56
D
492 497Right-handed alpha
Helix 57
57
D
525 529Right-handed 310
Helix 58
58
D
529 536Right-handed 310
Helix 59
59
D
560 571Right-handed alpha
Helix 60
60
E
312 323Right-handed alpha
Helix 61
61
E
327 339Right-handed alpha
Helix 62
62
E
342 351Right-handed alpha
Helix 63
63
E
353 376Right-handed alpha
Helix 64
64
E
377 389Right-handed alpha
Helix 65
65
E
394 405Right-handed alpha
Helix 66
66
E
408 421Right-handed alpha
Helix 67
67
E
438 451Right-handed alpha
Helix 68
68
E
456 462Right-handed 310
Helix 69
69
E
462 471Right-handed 310
Helix 70
70
E
481 492Right-handed alpha
Helix 71
71
E
492 498Right-handed alpha
Helix 72
72
E
529 536Right-handed 310
Helix 73
73
E
560 572Right-handed alpha
Helix 74
74
F
312 324Right-handed alpha
Helix 75
75
F
327 338Right-handed alpha
Helix 76
76
F
342 351Right-handed alpha
Helix 77
77
F
353 375Right-handed alpha
Helix 78
78
F
377 389Right-handed alpha
Helix 79
79
F
395 405Right-handed alpha
Helix 80
80
F
408 421Right-handed alpha
Helix 81
81
F
438 451Right-handed alpha
Helix 82
82
F
459 463Right-handed 310
Helix 83
83
F
464 471Right-handed 310
Helix 84
84
F
481 492Right-handed alpha
Helix 85
85
F
492 498Right-handed alpha
Helix 86
86
F
529 536Right-handed 310
Helix 87
87
F
560 571Right-handed alpha
Helix 88
88
F
572 576Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 5A9K. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 455first strand
Strand 2
A
475 480parallel
Strand 3
A
518 522parallel
Strand 4
A
428 432parallel
Strand 5
A
539 543parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 502first strand
Strand 2
A
512 513anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 454first strand
Strand 2
B
475 477parallel
Strand 3
B
518 522parallel
Strand 4
B
428 432parallel
Strand 5
B
540 543parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
500 503first strand
Strand 2
B
511 514anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
453 455first strand
Strand 2
C
475 477parallel
Strand 3
C
518 522parallel
Strand 4
C
428 432parallel
Strand 5
C
540 543parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
500 503first strand
Strand 2
C
511 514anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
453 455first strand
Strand 2
D
475 477parallel
Strand 3
D
518 522parallel
Strand 4
D
428 432parallel
Strand 5
D
540 543parallel
Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
500 503first strand
Strand 2
D
511 514anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
453 455first strand
Strand 2
E
475 480parallel
Strand 3
E
518 522parallel
Strand 4
E
428 432parallel
Strand 5
E
540 543parallel
Back to list of sheets
Back to top of page

There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
501 503first strand
Strand 2
E
511 513anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
453 455first strand
Strand 2
F
475 480parallel
Strand 3
F
518 522parallel
Strand 4
F
428 432parallel
Strand 5
F
540 543parallel
Back to list of sheets
Back to top of page

There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
501 503first strand
Strand 2
F
511 513anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il