Analysis of interatomic Contacts of Structural Units in PDB entry:
5A9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A9V entry

There are 6 chains in PDB entry 5A9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ASN 601
B
MET 1ASN 601
C
MET 1ASN 601
D
MET 1ASN 601
E
MET 1ASN 601
F
MET 1ASN 601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 5A9V. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1 3Right-handed 310
Helix 2
2
A
22 26Right-handed 310
Helix 3
3
A
83 92Right-handed alpha
Helix 4
4
A
107 119Right-handed alpha
Helix 5
5
A
136 150Right-handed alpha
Helix 6
6
A
183 194Right-handed alpha
Helix 7
7
A
327 342Right-handed alpha
Helix 8
8
A
363 376Right-handed alpha
Helix 9
9
A
411 421Right-handed alpha
Helix 10
10
A
445 449Right-handed alpha
Helix 11
11
A
450 460Right-handed alpha
Helix 12
12
A
497 505Right-handed alpha
Helix 13
13
A
564 570Right-handed alpha
Helix 14
14
A
593 599Right-handed alpha
Helix 15
15
B
1 3Right-handed 310
Helix 16
16
B
22 26Right-handed 310
Helix 17
17
B
83 92Right-handed alpha
Helix 18
18
B
107 119Right-handed alpha
Helix 19
19
B
136 150Right-handed alpha
Helix 20
20
B
183 194Right-handed alpha
Helix 21
21
B
327 342Right-handed alpha
Helix 22
22
B
363 376Right-handed alpha
Helix 23
23
B
411 421Right-handed alpha
Helix 24
24
B
445 449Right-handed alpha
Helix 25
25
B
450 460Right-handed alpha
Helix 26
26
B
503 507Right-handed 310
Helix 27
27
B
564 570Right-handed alpha
Helix 28
28
B
593 599Right-handed alpha
Helix 29
29
C
1 3Right-handed 310
Helix 30
30
C
22 26Right-handed 310
Helix 31
31
C
83 92Right-handed alpha
Helix 32
32
C
107 119Right-handed alpha
Helix 33
33
C
136 150Right-handed alpha
Helix 34
34
C
183 194Right-handed alpha
Helix 35
35
C
327 342Right-handed alpha
Helix 36
36
C
363 376Right-handed alpha
Helix 37
37
C
411 421Right-handed alpha
Helix 38
38
C
445 449Right-handed alpha
Helix 39
39
C
450 460Right-handed alpha
Helix 40
40
C
497 505Right-handed alpha
Helix 41
41
C
564 570Right-handed alpha
Helix 42
42
C
593 599Right-handed alpha
Helix 43
43
D
1 3Right-handed 310
Helix 44
44
D
22 26Right-handed 310
Helix 45
45
D
83 92Right-handed alpha
Helix 46
46
D
106 119Right-handed alpha
Helix 47
47
D
136 150Right-handed alpha
Helix 48
48
D
183 194Right-handed alpha
Helix 49
49
D
327 342Right-handed alpha
Helix 50
50
D
363 376Right-handed alpha
Helix 51
51
D
411 421Right-handed alpha
Helix 52
52
D
445 449Right-handed alpha
Helix 53
53
D
450 460Right-handed alpha
Helix 54
54
D
497 505Right-handed alpha
Helix 55
55
D
564 570Right-handed alpha
Helix 56
56
D
593 599Right-handed alpha
Helix 57
57
E
1 3Right-handed 310
Helix 58
58
E
22 26Right-handed 310
Helix 59
59
E
83 92Right-handed alpha
Helix 60
60
E
107 119Right-handed alpha
Helix 61
61
E
136 150Right-handed alpha
Helix 62
62
E
183 194Right-handed alpha
Helix 63
63
E
327 342Right-handed alpha
Helix 64
64
E
363 376Right-handed alpha
Helix 65
65
E
411 421Right-handed alpha
Helix 66
66
E
445 449Right-handed alpha
Helix 67
67
E
450 460Right-handed alpha
Helix 68
68
E
497 505Right-handed alpha
Helix 69
69
E
564 570Right-handed alpha
Helix 70
70
E
593 599Right-handed alpha
Helix 71
71
F
1 3Right-handed 310
Helix 72
72
F
22 26Right-handed 310
Helix 73
73
F
83 92Right-handed alpha
Helix 74
74
F
107 119Right-handed alpha
Helix 75
75
F
136 150Right-handed alpha
Helix 76
76
F
183 194Right-handed alpha
Helix 77
77
F
327 342Right-handed alpha
Helix 78
78
F
363 376Right-handed alpha
Helix 79
79
F
411 421Right-handed alpha
Helix 80
80
F
445 449Right-handed alpha
Helix 81
81
F
450 460Right-handed alpha
Helix 82
82
F
497 505Right-handed alpha
Helix 83
83
F
564 570Right-handed alpha
Helix 84
84
F
593 599Right-handed alpha
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There are 59 sheets in PDB entry 5A9V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, BA, BB, BC, BD, BE, BF, BG, BH, BI, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, A, DB, C, DD, DE, DF, G, DH, DI, DJ, DK, EA, EB, EC, ED, EE, EF, EG, EH, EI, FA, FB, FC, FD, FE, FF, FG, FH, FI,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
57 60first strand
Strand 2
A
68 74anti-parallel
Strand 3
A
5 11parallel
Strand 4
A
94 100parallel
Strand 5
A
122 128parallel
Strand 6
A
163 164parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
270 271first strand
Strand 2
A
224 228anti-parallel
Strand 3
A
206 209anti-parallel
Strand 4
A
287 289anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
213 215first strand
Strand 2
A
219 221anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
230 231first strand
Strand 2
A
265 266anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
237 239first strand
Strand 2
A
244 246anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
253 254first strand
Strand 2
A
259 260anti-parallel
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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
346 349first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
307 313anti-parallel
Strand 4
A
380 382anti-parallel
Strand 5
A
576 580anti-parallel
Strand 6
A
585 589anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
346 349first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
307 313anti-parallel
Strand 4
A
386 387anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
426 429first strand
Strand 2
A
436 444anti-parallel
Strand 3
A
397 408anti-parallel
Strand 4
A
463 474anti-parallel
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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
523 526first strand
Strand 2
A
487 489anti-parallel
Strand 3
A
533 534parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
494 495first strand
Strand 2
A
517 518anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
57 60first strand
Strand 2
B
68 74anti-parallel
Strand 3
B
5 11parallel
Strand 4
B
94 100parallel
Strand 5
B
122 128parallel
Strand 6
B
163 164parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
270 274first strand
Strand 2
B
219 228anti-parallel
Strand 3
B
206 215anti-parallel
Strand 4
B
287 289anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
230 231first strand
Strand 2
B
265 266anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
237 239first strand
Strand 2
B
244 246anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
253 254first strand
Strand 2
B
259 260anti-parallel
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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
346 349first strand
Strand 2
B
355 359anti-parallel
Strand 3
B
308 313anti-parallel
Strand 4
B
380 382anti-parallel
Strand 5
B
576 580anti-parallel
Strand 6
B
585 589anti-parallel
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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
426 429first strand
Strand 2
B
436 444anti-parallel
Strand 3
B
397 408anti-parallel
Strand 4
B
463 474anti-parallel
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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
523 526first strand
Strand 2
B
487 489anti-parallel
Strand 3
B
533 534parallel
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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
494 495first strand
Strand 2
B
517 518anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
57 60first strand
Strand 2
C
68 74anti-parallel
Strand 3
C
5 11parallel
Strand 4
C
94 100parallel
Strand 5
C
122 128parallel
Strand 6
C
163 164parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
270 271first strand
Strand 2
C
224 228anti-parallel
Strand 3
C
206 209anti-parallel
Strand 4
C
287 289anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
213 215first strand
Strand 2
C
219 221anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
230 231first strand
Strand 2
C
265 266anti-parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
237 239first strand
Strand 2
C
244 246anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
253 254first strand
Strand 2
C
259 260anti-parallel
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There are 6 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
346 349first strand
Strand 2
C
355 359anti-parallel
Strand 3
C
308 313anti-parallel
Strand 4
C
380 382anti-parallel
Strand 5
C
576 580anti-parallel
Strand 6
C
585 589anti-parallel
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There are 4 strands in CH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
426 429first strand
Strand 2
C
436 444anti-parallel
Strand 3
C
397 408anti-parallel
Strand 4
C
463 474anti-parallel
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There are 3 strands in CI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
523 526first strand
Strand 2
C
487 489anti-parallel
Strand 3
C
533 534parallel
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There are 2 strands in CJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
494 495first strand
Strand 2
C
517 518anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
57 60first strand
Strand 2
D
68 74anti-parallel
Strand 3
D
5 11parallel
Strand 4
D
94 100parallel
Strand 5
D
122 128parallel
Strand 6
D
163 164parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
270 271first strand
Strand 2
D
224 228anti-parallel
Strand 3
D
206 209anti-parallel
Strand 4
D
287 289anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
213 215first strand
Strand 2
D
219 221anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
230 231first strand
Strand 2
D
265 266anti-parallel
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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
237 239first strand
Strand 2
D
244 246anti-parallel
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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
253 254first strand
Strand 2
D
259 260anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
346 349first strand
Strand 2
D
355 360anti-parallel
Strand 3
D
307 313anti-parallel
Strand 4
D
380 382anti-parallel
Strand 5
D
576 580anti-parallel
Strand 6
D
585 589anti-parallel
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There are 4 strands in DH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
346 349first strand
Strand 2
D
355 360anti-parallel
Strand 3
D
307 313anti-parallel
Strand 4
D
386 387anti-parallel
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There are 4 strands in DI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
426 429first strand
Strand 2
D
436 444anti-parallel
Strand 3
D
400 408anti-parallel
Strand 4
D
463 471anti-parallel
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There are 3 strands in DJ sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
523 526first strand
Strand 2
D
487 489anti-parallel
Strand 3
D
533 534parallel
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There are 2 strands in DK sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
494 495first strand
Strand 2
D
517 518anti-parallel
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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
57 60first strand
Strand 2
E
68 74anti-parallel
Strand 3
E
5 11parallel
Strand 4
E
94 100parallel
Strand 5
E
122 128parallel
Strand 6
E
163 164parallel
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There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
244 246first strand
Strand 2
E
237 239anti-parallel
Strand 3
E
287 290anti-parallel
Strand 4
E
206 215anti-parallel
Strand 5
E
219 228anti-parallel
Strand 6
E
270 274anti-parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
230 231first strand
Strand 2
E
265 266anti-parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
253 254first strand
Strand 2
E
259 260anti-parallel
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There are 6 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
346 349first strand
Strand 2
E
355 360anti-parallel
Strand 3
E
307 313anti-parallel
Strand 4
E
380 382anti-parallel
Strand 5
E
576 580anti-parallel
Strand 6
E
585 589anti-parallel
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There are 4 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
346 349first strand
Strand 2
E
355 360anti-parallel
Strand 3
E
307 313anti-parallel
Strand 4
E
386 387anti-parallel
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There are 4 strands in EG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
426 429first strand
Strand 2
E
436 444anti-parallel
Strand 3
E
400 408anti-parallel
Strand 4
E
463 471anti-parallel
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There are 3 strands in EH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
523 526first strand
Strand 2
E
487 489anti-parallel
Strand 3
E
533 534parallel
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There are 2 strands in EI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
494 495first strand
Strand 2
E
517 518anti-parallel
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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
57 60first strand
Strand 2
F
68 74anti-parallel
Strand 3
F
5 11parallel
Strand 4
F
94 100parallel
Strand 5
F
122 128parallel
Strand 6
F
163 164parallel
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There are 6 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
244 246first strand
Strand 2
F
237 239anti-parallel
Strand 3
F
287 290anti-parallel
Strand 4
F
206 215anti-parallel
Strand 5
F
219 228anti-parallel
Strand 6
F
270 274anti-parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
230 231first strand
Strand 2
F
265 266anti-parallel
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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
253 254first strand
Strand 2
F
259 260anti-parallel
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There are 6 strands in FE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
346 349first strand
Strand 2
F
355 360anti-parallel
Strand 3
F
307 313anti-parallel
Strand 4
F
380 382anti-parallel
Strand 5
F
576 580anti-parallel
Strand 6
F
585 589anti-parallel
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There are 4 strands in FF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
346 349first strand
Strand 2
F
355 360anti-parallel
Strand 3
F
307 313anti-parallel
Strand 4
F
386 387anti-parallel
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There are 4 strands in FG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
426 429first strand
Strand 2
F
436 444anti-parallel
Strand 3
F
400 408anti-parallel
Strand 4
F
463 471anti-parallel
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There are 3 strands in FH sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
523 526first strand
Strand 2
F
487 489anti-parallel
Strand 3
F
533 534parallel
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There are 2 strands in FI sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
494 495first strand
Strand 2
F
517 518anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il