Analysis of interatomic Contacts of Structural Units in PDB entry:
5A9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A9W entry

There is 1 chain in PDB entry 5A9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 604
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5A9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 3Right-handed 310
Helix 2
2
A
20 25Right-handed alpha
Helix 3
3
A
85 90Right-handed alpha
Helix 4
4
A
106 118Right-handed alpha
Helix 5
5
A
136 149Right-handed alpha
Helix 6
6
A
182 194Right-handed alpha
Helix 7
7
A
327 342Right-handed alpha
Helix 8
8
A
362 377Right-handed alpha
Helix 9
9
A
408 410Right-handed 310
Helix 10
10
A
411 422Right-handed alpha
Helix 11
11
A
445 449Right-handed alpha
Helix 12
12
A
451 460Right-handed alpha
Helix 13
13
A
497 502Right-handed alpha
Helix 14
14
A
564 572Right-handed alpha
Helix 15
15
A
593 599Right-handed alpha
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There are 11 sheets in PDB entry 5A9W. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
5 11parallel
Strand 3
A
94 100parallel
Strand 4
A
124 128parallel
Strand 5
A
163 164parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
206 209anti-parallel
Strand 3
A
287 289anti-parallel
Strand 4
A
238 239anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
219 221anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
271 273anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
307 313anti-parallel
Strand 4
A
380 382anti-parallel
Strand 5
A
576 580anti-parallel
Strand 6
A
585 589anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
307 313anti-parallel
Strand 4
A
386 387anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
396 407anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 430first strand
Strand 2
A
437 444anti-parallel
Strand 3
A
396 407anti-parallel
Strand 4
A
464 474anti-parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 430first strand
Strand 2
A
437 444anti-parallel
Strand 3
A
396 407anti-parallel
Strand 4
A
390 391anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 474first strand
Strand 2
A
396 407anti-parallel
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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 489first strand
Strand 2
A
523 527anti-parallel
Strand 3
A
508 510anti-parallel
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