Analysis of interatomic Contacts of Structural Units in PDB entry:
5A9X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A9X entry

There is 1 chain in PDB entry 5A9X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5A9X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
84 89Right-handed alpha
Helix 3
3
A
106 119Right-handed alpha
Helix 4
4
A
136 150Right-handed alpha
Helix 5
5
A
184 194Right-handed alpha
Helix 6
6
A
327 342Right-handed alpha
Helix 7
7
A
362 375Right-handed alpha
Helix 8
8
A
411 422Right-handed alpha
Helix 9
9
A
446 448Right-handed 310
Helix 10
10
A
450 459Right-handed alpha
Helix 11
11
A
497 505Right-handed alpha
Helix 12
12
A
564 570Right-handed alpha
Helix 13
13
A
595 601Right-handed alpha
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There are 7 sheets in PDB entry 5A9X. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
68 75anti-parallel
Strand 3
A
8 11parallel
Strand 4
A
94 100parallel
Strand 5
A
125 128parallel
Strand 6
A
163 164parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
287 289anti-parallel
Strand 3
A
206 209anti-parallel
Strand 4
A
224 228anti-parallel
Strand 5
A
270 273anti-parallel
Strand 6
A
251 255anti-parallel
Strand 7
A
258 261anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
219 221anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
307 313anti-parallel
Strand 4
A
380 382anti-parallel
Strand 5
A
576 580anti-parallel
Strand 6
A
585 589anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
307 313anti-parallel
Strand 4
A
386 387anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 428first strand
Strand 2
A
436 444anti-parallel
Strand 3
A
398 408anti-parallel
Strand 4
A
464 473anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 490first strand
Strand 2
A
533 535parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il