Analysis of interatomic Contacts of Structural Units in PDB entry:
5A9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5A9Y entry

There is 1 chain in PDB entry 5A9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5A9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 26Right-handed alpha
Helix 2
2
A
84 92Right-handed alpha
Helix 3
3
A
108 114Right-handed alpha
Helix 4
4
A
136 150Right-handed alpha
Helix 5
5
A
183 194Right-handed alpha
Helix 6
6
A
328 339Right-handed alpha
Helix 7
7
A
363 377Right-handed alpha
Helix 8
8
A
411 421Right-handed alpha
Helix 9
9
A
446 449Right-handed 310
Helix 10
10
A
450 458Right-handed alpha
Helix 11
11
A
497 505Right-handed alpha
Helix 12
12
A
564 572Right-handed alpha
Helix 13
13
A
593 599Right-handed alpha
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There are 11 sheets in PDB entry 5A9Y. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
8 11parallel
Strand 3
A
94 99parallel
Strand 4
A
122 127parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
219 221anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
287 289anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
272 274anti-parallel
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There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
307 313anti-parallel
Strand 4
A
380 382anti-parallel
Strand 5
A
576 580anti-parallel
Strand 6
A
585 589anti-parallel
Strand 7
A
522 526anti-parallel
Strand 8
A
487 489anti-parallel
Strand 9
A
533 534parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 349first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
307 313anti-parallel
Strand 4
A
386 387anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 426first strand
Strand 2
A
436 444anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 431first strand
Strand 2
A
436 444parallel
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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 473first strand
Strand 2
A
398 408anti-parallel
Strand 3
A
436 444anti-parallel
Strand 4
A
430 431parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 473first strand
Strand 2
A
398 408anti-parallel
Strand 3
A
436 444anti-parallel
Strand 4
A
425 426anti-parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
517 518anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il