Analysis of interatomic Contacts of Structural Units in PDB entry:
5AA2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AA2 entry

There are 3 chains in PDB entry 5AA2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 28	SER 446
B	GLY 30	GLN 445
C	LYS 28	TRP 442

There are 80 helices in PDB entry 5AA2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	52	66	Right-handed alpha
Helix 2	2	A	76	86	Right-handed alpha
Helix 3	3	A	131	136	Right-handed 310
Helix 4	4	A	146	159	Right-handed alpha
Helix 5	5	A	171	182	Right-handed alpha
Helix 6	6	A	191	198	Right-handed alpha
Helix 7	7	A	199	201	Right-handed 310
Helix 8	8	A	226	242	Right-handed alpha
Helix 9	9	A	243	253	Right-handed alpha
Helix 10	10	A	262	274	Right-handed alpha
Helix 11	11	A	274	290	Right-handed alpha
Helix 12	12	A	292	305	Right-handed alpha
Helix 13	13	A	324	330	Right-handed alpha
Helix 14	14	A	337	356	Right-handed alpha
Helix 15	15	A	363	376	Right-handed alpha
Helix 16	16	A	376	390	Right-handed alpha
Helix 17	17	A	396	404	Right-handed alpha
Helix 18	18	A	405	408	Right-handed 310
Helix 19	19	A	409	414	Right-handed alpha
Helix 20	20	A	422	444	Right-handed alpha
Helix 21	21	B	52	66	Right-handed alpha
Helix 22	22	B	76	86	Right-handed alpha
Helix 23	23	B	131	136	Right-handed 310
Helix 24	24	B	146	159	Right-handed alpha
Helix 25	25	B	171	181	Right-handed alpha
Helix 26	26	B	191	198	Right-handed alpha
Helix 27	27	B	199	201	Right-handed 310
Helix 28	28	B	226	242	Right-handed alpha
Helix 29	29	B	243	253	Right-handed alpha
Helix 30	30	B	265	274	Right-handed alpha
Helix 31	31	B	274	289	Right-handed alpha
Helix 32	32	B	292	305	Right-handed alpha
Helix 33	33	B	323	331	Right-handed alpha
Helix 34	34	B	337	355	Right-handed alpha
Helix 35	35	B	363	376	Right-handed alpha
Helix 36	36	B	376	390	Right-handed alpha
Helix 37	37	B	396	404	Right-handed alpha
Helix 38	38	B	405	408	Right-handed 310
Helix 39	39	B	409	414	Right-handed alpha
Helix 40	40	B	422	443	Right-handed alpha
Helix 41	41	C	52	66	Right-handed alpha
Helix 42	42	C	76	86	Right-handed alpha
Helix 43	43	C	131	136	Right-handed 310
Helix 44	44	C	146	157	Right-handed alpha
Helix 45	45	C	171	181	Right-handed alpha
Helix 46	46	C	191	198	Right-handed alpha
Helix 47	47	C	199	201	Right-handed 310
Helix 48	48	C	226	242	Right-handed alpha
Helix 49	49	C	243	253	Right-handed alpha
Helix 50	50	C	263	274	Right-handed alpha
Helix 51	51	C	274	288	Right-handed alpha
Helix 52	52	C	292	305	Right-handed alpha
Helix 53	53	C	323	331	Right-handed alpha
Helix 54	54	C	337	356	Right-handed alpha
Helix 55	55	C	363	376	Right-handed alpha
Helix 56	56	C	376	390	Right-handed alpha
Helix 57	57	C	396	404	Right-handed alpha
Helix 58	58	C	405	408	Right-handed 310
Helix 59	59	C	409	414	Right-handed alpha
Helix 60	60	C	422	443	Right-handed alpha
Helix 61	61	D	52	63	Right-handed alpha
Helix 62	62	D	76	85	Right-handed alpha
Helix 63	63	D	131	136	Right-handed 310
Helix 64	64	D	146	157	Right-handed alpha
Helix 65	65	D	171	182	Right-handed alpha
Helix 66	66	D	191	198	Right-handed alpha
Helix 67	67	D	199	201	Right-handed 310
Helix 68	68	D	226	239	Right-handed alpha
Helix 69	69	D	243	253	Right-handed alpha
Helix 70	70	D	265	274	Right-handed alpha
Helix 71	71	D	274	288	Right-handed alpha
Helix 72	72	D	292	305	Right-handed alpha
Helix 73	73	D	323	331	Right-handed alpha
Helix 74	74	D	337	353	Right-handed alpha
Helix 75	75	D	363	376	Right-handed alpha
Helix 76	76	D	376	390	Right-handed alpha
Helix 77	77	D	396	404	Right-handed alpha
Helix 78	78	D	405	408	Right-handed 310
Helix 79	79	D	409	414	Right-handed alpha
Helix 80	80	D	422	443	Right-handed alpha

There are 22 sheets in PDB entry 5AA2. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, CA, CB, CC, CD, CE, A, DB, C, DD, DE, DF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	73	first strand
Strand 2	A	31	36	parallel
Strand 3	A	92	97	parallel
Strand 4	A	214	221	anti-parallel
Strand 5	A	114	116	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	73	first strand
Strand 2	A	31	36	parallel
Strand 3	A	92	97	parallel
Strand 4	A	214	221	anti-parallel
Strand 5	A	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	214	221	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	49	51	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	190	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	204	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	165	167	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	322	323	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	73	first strand
Strand 2	B	31	36	parallel
Strand 3	B	92	97	parallel
Strand 4	B	217	221	anti-parallel
Strand 5	B	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	49	51	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	214	215	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	167	first strand
Strand 2	B	140	143	parallel
Strand 3	B	186	190	parallel
Strand 4	B	118	123	anti-parallel
Strand 5	B	204	209	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	73	first strand
Strand 2	C	31	36	parallel
Strand 3	C	92	93	parallel

Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	46	first strand
Strand 2	C	49	51	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	116	first strand
Strand 2	C	214	221	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	190	first strand
Strand 2	C	118	123	anti-parallel
Strand 3	C	204	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	143	first strand
Strand 2	C	165	167	parallel

Back to list of sheets
Back to top of page

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	73	first strand
Strand 2	D	31	36	parallel
Strand 3	D	92	97	parallel
Strand 4	D	215	221	anti-parallel
Strand 5	D	114	115	parallel

Back to list of sheets
Back to top of page

There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	73	first strand
Strand 2	D	31	36	parallel
Strand 3	D	92	97	parallel
Strand 4	D	215	221	anti-parallel
Strand 5	D	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	115	first strand
Strand 2	D	215	221	parallel

Back to list of sheets
Back to top of page

There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	49	51	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	190	first strand
Strand 2	D	118	123	anti-parallel
Strand 3	D	204	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	143	first strand
Strand 2	D	165	167	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AA2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AA2