Analysis of interatomic Contacts of Structural Units in PDB entry:
5AA7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AA7 entry

There are 2 chains in PDB entry 5AA7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 32SER 173
B
 HIS 32SER 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5AA7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 47Right-handed alpha
Helix 2
2
A
54 60Right-handed 310
Helix 3
3
A
60 63Right-handed 310
Helix 4
4
A
77 85Right-handed 310
Helix 5
5
B
40 47Right-handed alpha
Helix 6
6
B
54 60Right-handed 310
Helix 7
7
B
60 63Right-handed 310
Helix 8
8
B
77 85Right-handed 310
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There are 10 sheets in PDB entry 5AA7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
99 105anti-parallel
Strand 3
A
136 141anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
162 172anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
162 172anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 127first strand
Strand 2
A
111 118anti-parallel
Strand 3
A
147 157anti-parallel
Strand 4
A
162 172anti-parallel
Strand 5
A
93 95anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 127first strand
Strand 2
A
111 118anti-parallel
Strand 3
A
147 157anti-parallel
Strand 4
A
162 172anti-parallel
Strand 5
A
65 67anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
99 105anti-parallel
Strand 3
B
136 141anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
162 172anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
162 172anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 127first strand
Strand 2
B
111 118anti-parallel
Strand 3
B
147 157anti-parallel
Strand 4
B
162 172anti-parallel
Strand 5
B
93 95anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 127first strand
Strand 2
B
111 118anti-parallel
Strand 3
B
147 157anti-parallel
Strand 4
B
162 172anti-parallel
Strand 5
B
65 67anti-parallel
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