Analysis of interatomic Contacts of Structural Units in PDB entry:
5AAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AAV entry

There are 2 chains in PDB entry 5AAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 303ALA 551
B
 LEU 306ASP 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5AAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
306 310Right-handed 310
Helix 2
2
A
311 323Right-handed alpha
Helix 3
3
A
338 363Right-handed alpha
Helix 4
4
A
366 370Right-handed 310
Helix 5
5
A
371 395Right-handed alpha
Helix 6
6
A
423 439Right-handed alpha
Helix 7
7
A
441 456Right-handed alpha
Helix 8
8
A
470 493Right-handed alpha
Helix 9
9
A
496 528Right-handed alpha
Helix 10
10
A
536 547Right-handed alpha
Helix 11
11
A
548 550Right-handed 310
Helix 12
12
B
306 310Right-handed 310
Helix 13
13
B
311 323Right-handed alpha
Helix 14
14
B
338 363Right-handed alpha
Helix 15
15
B
371 396Right-handed alpha
Helix 16
16
B
412 416Right-handed alpha
Helix 17
17
B
421 439Right-handed alpha
Helix 18
18
B
441 456Right-handed alpha
Helix 19
19
B
472 493Right-handed alpha
Helix 20
20
B
496 526Right-handed alpha
Helix 21
21
B
537 545Right-handed alpha
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There are 2 sheets in PDB entry 5AAV. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il