Analysis of interatomic Contacts of Structural Units in PDB entry:
5AAW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AAW entry

There are 12 chains in PDB entry 5AAW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	ARG 244
B	GLN 1	ARG 244
C	TYR 299	LYS 394
D	GLN 2	ARG 244
E	TYR 299	LYS 394
F	GLN 2	ARG 244
G	TYR 299	TRP 391
H	GLN 2	ARG 244
I	TYR 299	LYS 394
J	TYR 299	LYS 394
K	GLN 2	ARG 244
L	TYR 299	LYS 394

There are 18 helices in PDB entry 5AAW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	28	32	Right-handed 310
Helix 2	2	A	87	91	Right-handed 310
Helix 3	3	A	215	219	Right-handed 310
Helix 4	4	B	28	32	Right-handed 310
Helix 5	5	B	87	91	Right-handed 310
Helix 6	6	B	215	219	Right-handed 310
Helix 7	7	D	28	32	Right-handed 310
Helix 8	8	D	87	91	Right-handed 310
Helix 9	9	D	215	219	Right-handed 310
Helix 10	10	F	28	32	Right-handed 310
Helix 11	11	F	87	91	Right-handed 310
Helix 12	12	F	215	219	Right-handed 310
Helix 13	13	H	28	32	Right-handed 310
Helix 14	14	H	87	91	Right-handed 310
Helix 15	15	H	215	219	Right-handed 310
Helix 16	16	K	28	32	Right-handed 310
Helix 17	17	K	87	91	Right-handed 310
Helix 18	18	K	215	219	Right-handed 310

There are 66 sheets in PDB entry 5AAW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE, FF, FG, GA, GB, GC, GD, GE, HA, HB, HC, HD, HE, IA, IB, IC, ID, IE, JA, JB, JC, JD, JE, JF, KA, KB, KC, KD, KE, LA, LB, LC, LD, LE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	110	114	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	105	106	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	110	114	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	52	anti-parallel
Strand 6	A	57	60	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	92	98	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	139	first strand
Strand 2	A	151	157	anti-parallel
Strand 3	A	206	211	anti-parallel
Strand 4	A	198	203	anti-parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	145	first strand
Strand 2	A	238	242	parallel
Strand 3	A	221	226	anti-parallel
Strand 4	A	169	174	anti-parallel
Strand 5	A	181	185	anti-parallel
Strand 6	A	189	190	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	166	167	anti-parallel

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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	110	114	anti-parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	105	107	anti-parallel
Strand 5	B	3	7	parallel
Strand 6	B	19	25	anti-parallel
Strand 7	B	78	83	anti-parallel
Strand 8	B	68	73	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	110	114	anti-parallel
Strand 3	B	92	98	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	52	anti-parallel
Strand 6	B	57	60	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	139	first strand
Strand 2	B	151	157	anti-parallel
Strand 3	B	206	211	anti-parallel
Strand 4	B	198	203	anti-parallel

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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	238	242	parallel
Strand 3	B	221	226	anti-parallel
Strand 4	B	169	174	anti-parallel
Strand 5	B	181	185	anti-parallel
Strand 6	B	189	190	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	166	167	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	308	first strand
Strand 2	C	320	326	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	314	first strand
Strand 2	C	320	326	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	369	first strand
Strand 2	C	320	326	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	357	358	anti-parallel

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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	340	first strand
Strand 2	C	374	380	anti-parallel
Strand 3	C	387	393	anti-parallel

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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	110	114	anti-parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	105	107	anti-parallel
Strand 5	D	3	7	parallel
Strand 6	D	19	25	anti-parallel
Strand 7	D	78	83	anti-parallel
Strand 8	D	68	73	anti-parallel

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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	110	114	anti-parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	57	60	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	139	first strand
Strand 2	D	151	157	anti-parallel
Strand 3	D	206	211	anti-parallel
Strand 4	D	198	203	anti-parallel

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There are 6 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	145	first strand
Strand 2	D	238	242	parallel
Strand 3	D	221	226	anti-parallel
Strand 4	D	169	174	anti-parallel
Strand 5	D	181	185	anti-parallel
Strand 6	D	189	190	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	166	167	anti-parallel

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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	308	first strand
Strand 2	E	320	326	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	314	first strand
Strand 2	E	320	326	anti-parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	351	first strand
Strand 2	E	364	370	anti-parallel
Strand 3	E	320	326	anti-parallel
Strand 4	E	313	314	anti-parallel

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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	351	first strand
Strand 2	E	364	370	anti-parallel
Strand 3	E	320	326	anti-parallel
Strand 4	E	306	308	anti-parallel

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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	333	334	first strand
Strand 2	E	357	358	anti-parallel

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There are 3 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	340	first strand
Strand 2	E	374	380	anti-parallel
Strand 3	E	387	393	anti-parallel

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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	110	114	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	105	106	anti-parallel

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There are 6 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	110	114	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	52	anti-parallel
Strand 6	F	57	60	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	105	106	first strand
Strand 2	F	92	98	anti-parallel

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There are 4 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	139	first strand
Strand 2	F	151	157	anti-parallel
Strand 3	F	206	211	anti-parallel
Strand 4	F	198	203	anti-parallel

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There are 6 strands in FF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	145	first strand
Strand 2	F	238	242	parallel
Strand 3	F	221	226	anti-parallel
Strand 4	F	169	174	anti-parallel
Strand 5	F	181	185	anti-parallel
Strand 6	F	189	190	anti-parallel

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There are 2 strands in FG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	163	first strand
Strand 2	F	166	167	anti-parallel

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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	306	308	first strand
Strand 2	G	320	326	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	313	314	first strand
Strand 2	G	320	326	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	364	369	first strand
Strand 2	G	320	326	anti-parallel

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There are 2 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	333	334	first strand
Strand 2	G	357	358	anti-parallel

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There are 3 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	337	340	first strand
Strand 2	G	377	380	anti-parallel
Strand 3	G	387	390	anti-parallel

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There are 8 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	110	114	anti-parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	105	107	anti-parallel
Strand 5	H	3	7	parallel
Strand 6	H	19	25	anti-parallel
Strand 7	H	78	83	anti-parallel
Strand 8	H	68	73	anti-parallel

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There are 6 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	110	114	anti-parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	139	first strand
Strand 2	H	151	157	anti-parallel
Strand 3	H	206	211	anti-parallel
Strand 4	H	198	203	anti-parallel

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There are 6 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	145	first strand
Strand 2	H	238	242	parallel
Strand 3	H	221	226	anti-parallel
Strand 4	H	169	174	anti-parallel
Strand 5	H	181	185	anti-parallel
Strand 6	H	189	190	anti-parallel

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There are 2 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	163	first strand
Strand 2	H	166	167	anti-parallel

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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	306	308	first strand
Strand 2	I	320	326	anti-parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	313	314	first strand
Strand 2	I	320	326	anti-parallel

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There are 2 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	364	369	first strand
Strand 2	I	320	326	anti-parallel

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There are 2 strands in ID sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	333	334	first strand
Strand 2	I	357	358	anti-parallel

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There are 3 strands in IE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	337	340	first strand
Strand 2	I	374	380	anti-parallel
Strand 3	I	387	393	anti-parallel

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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	306	308	first strand
Strand 2	J	319	326	anti-parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	313	315	first strand
Strand 2	J	319	326	anti-parallel

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There are 4 strands in JC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	350	351	first strand
Strand 2	J	364	370	anti-parallel
Strand 3	J	319	326	anti-parallel
Strand 4	J	313	315	anti-parallel

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There are 4 strands in JD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	350	351	first strand
Strand 2	J	364	370	anti-parallel
Strand 3	J	319	326	anti-parallel
Strand 4	J	306	308	anti-parallel

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There are 2 strands in JE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	333	334	first strand
Strand 2	J	357	358	anti-parallel

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There are 3 strands in JF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	337	340	first strand
Strand 2	J	374	380	anti-parallel
Strand 3	J	387	393	anti-parallel

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There are 8 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	13	first strand
Strand 2	K	110	114	anti-parallel
Strand 3	K	92	98	anti-parallel
Strand 4	K	105	107	anti-parallel
Strand 5	K	3	7	parallel
Strand 6	K	19	25	anti-parallel
Strand 7	K	78	83	anti-parallel
Strand 8	K	68	73	anti-parallel

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There are 6 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	13	first strand
Strand 2	K	110	114	anti-parallel
Strand 3	K	92	98	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	46	52	anti-parallel
Strand 6	K	57	60	anti-parallel

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There are 4 strands in KC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	136	139	first strand
Strand 2	K	151	157	anti-parallel
Strand 3	K	206	211	anti-parallel
Strand 4	K	198	203	anti-parallel

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There are 6 strands in KD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	142	145	first strand
Strand 2	K	238	242	parallel
Strand 3	K	221	226	anti-parallel
Strand 4	K	169	174	anti-parallel
Strand 5	K	181	185	anti-parallel
Strand 6	K	189	190	anti-parallel

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There are 2 strands in KE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	162	163	first strand
Strand 2	K	166	167	anti-parallel

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There are 2 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	306	308	first strand
Strand 2	L	319	326	anti-parallel

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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	313	315	first strand
Strand 2	L	319	326	parallel

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There are 2 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	364	369	first strand
Strand 2	L	319	326	anti-parallel

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There are 2 strands in LD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	333	334	first strand
Strand 2	L	357	358	anti-parallel

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There are 3 strands in LE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	337	340	first strand
Strand 2	L	374	380	anti-parallel
Strand 3	L	387	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AAW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AAW