Analysis of interatomic Contacts of Structural Units in PDB entry:
5AB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5AB7 entry

There are 6 chains in PDB entry 5AB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	LEU 409
B	SER 3	ASP 408
C	SER 3	LEU 409
D	SER 3	LEU 409
E	SER 3	LEU 409
F	SER 3	LEU 409

There are119 helices in PDB entry 5AB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	22	39	Right-handed alpha
Helix 2	2	A	41	45	Right-handed 310
Helix 3	3	A	60	69	Right-handed alpha
Helix 4	4	A	85	87	Right-handed 310
Helix 5	5	A	88	103	Right-handed alpha
Helix 6	6	A	121	132	Right-handed alpha
Helix 7	7	A	141	159	Right-handed alpha
Helix 8	8	A	161	177	Right-handed alpha
Helix 9	9	A	189	195	Right-handed alpha
Helix 10	10	A	206	208	Right-handed 310
Helix 11	11	A	223	230	Right-handed alpha
Helix 12	12	A	267	271	Right-handed 310
Helix 13	13	A	272	285	Right-handed alpha
Helix 14	14	A	287	291	Right-handed 310
Helix 15	15	A	300	311	Right-handed alpha
Helix 16	16	A	318	332	Right-handed alpha
Helix 17	17	A	338	342	Right-handed 310
Helix 18	18	A	348	353	Right-handed alpha
Helix 19	19	A	360	373	Right-handed alpha
Helix 20	20	A	376	380	Right-handed 310
Helix 21	21	B	22	39	Right-handed alpha
Helix 22	22	B	41	45	Right-handed 310
Helix 23	23	B	60	69	Right-handed alpha
Helix 24	24	B	85	87	Right-handed 310
Helix 25	25	B	88	103	Right-handed alpha
Helix 26	26	B	121	132	Right-handed alpha
Helix 27	27	B	141	159	Right-handed alpha
Helix 28	28	B	161	177	Right-handed alpha
Helix 29	29	B	189	195	Right-handed alpha
Helix 30	30	B	206	208	Right-handed 310
Helix 31	31	B	223	231	Right-handed alpha
Helix 32	32	B	267	271	Right-handed 310
Helix 33	33	B	272	285	Right-handed alpha
Helix 34	34	B	287	291	Right-handed 310
Helix 35	35	B	300	311	Right-handed alpha
Helix 36	36	B	318	332	Right-handed alpha
Helix 37	37	B	338	342	Right-handed 310
Helix 38	38	B	348	353	Right-handed alpha
Helix 39	39	B	360	373	Right-handed alpha
Helix 40	40	B	376	380	Right-handed 310
Helix 41	41	C	22	39	Right-handed alpha
Helix 42	42	C	41	45	Right-handed 310
Helix 43	43	C	60	69	Right-handed alpha
Helix 44	44	C	85	87	Right-handed 310
Helix 45	45	C	88	103	Right-handed alpha
Helix 46	46	C	121	132	Right-handed alpha
Helix 47	47	C	141	159	Right-handed alpha
Helix 48	48	C	161	177	Right-handed alpha
Helix 49	49	C	189	195	Right-handed alpha
Helix 50	50	C	206	208	Right-handed 310
Helix 51	51	C	223	231	Right-handed alpha
Helix 52	52	C	267	271	Right-handed 310
Helix 53	53	C	272	285	Right-handed alpha
Helix 54	54	C	287	291	Right-handed 310
Helix 55	55	C	300	311	Right-handed alpha
Helix 56	56	C	318	332	Right-handed alpha
Helix 57	57	C	338	342	Right-handed 310
Helix 58	58	C	348	353	Right-handed alpha
Helix 59	59	C	360	373	Right-handed alpha
Helix 60	60	C	376	380	Right-handed 310
Helix 61	61	D	22	39	Right-handed alpha
Helix 62	62	D	41	45	Right-handed 310
Helix 63	63	D	60	69	Right-handed alpha
Helix 64	64	D	85	87	Right-handed 310
Helix 65	65	D	88	103	Right-handed alpha
Helix 66	66	D	121	132	Right-handed alpha
Helix 67	67	D	141	159	Right-handed alpha
Helix 68	68	D	161	177	Right-handed alpha
Helix 69	69	D	189	195	Right-handed alpha
Helix 70	70	D	206	208	Right-handed 310
Helix 71	71	D	223	231	Right-handed alpha
Helix 72	72	D	267	271	Right-handed 310
Helix 73	73	D	272	285	Right-handed alpha
Helix 74	74	D	287	291	Right-handed 310
Helix 75	75	D	300	311	Right-handed alpha
Helix 76	76	D	318	332	Right-handed alpha
Helix 77	77	D	338	342	Right-handed 310
Helix 78	78	D	348	353	Right-handed alpha
Helix 79	79	D	360	373	Right-handed alpha
Helix 80	80	D	376	380	Right-handed 310
Helix 81	81	E	22	39	Right-handed alpha
Helix 82	82	E	41	45	Right-handed 310
Helix 83	83	E	60	69	Right-handed alpha
Helix 84	84	E	85	87	Right-handed 310
Helix 85	85	E	88	103	Right-handed alpha
Helix 86	86	E	121	132	Right-handed alpha
Helix 87	87	E	141	159	Right-handed alpha
Helix 88	88	E	161	177	Right-handed alpha
Helix 89	89	E	189	195	Right-handed alpha
Helix 90	90	E	206	208	Right-handed 310
Helix 91	91	E	223	230	Right-handed alpha
Helix 92	92	E	267	271	Right-handed 310
Helix 93	93	E	272	285	Right-handed alpha
Helix 94	94	E	287	291	Right-handed 310
Helix 95	95	E	300	311	Right-handed alpha
Helix 96	96	E	318	332	Right-handed alpha
Helix 97	97	E	338	342	Right-handed 310
Helix 98	98	E	348	353	Right-handed alpha
Helix 99	99	E	360	373	Right-handed alpha
Helix 100	100	E	376	380	Right-handed 310
Helix 101	101	F	22	39	Right-handed alpha
Helix 102	102	F	41	45	Right-handed 310
Helix 103	103	F	60	69	Right-handed alpha
Helix 104	104	F	85	87	Right-handed 310
Helix 105	105	F	88	103	Right-handed alpha
Helix 106	106	F	121	132	Right-handed alpha
Helix 107	107	F	141	159	Right-handed alpha
Helix 108	108	F	161	177	Right-handed alpha
Helix 109	109	F	189	195	Right-handed alpha
Helix 110	110	F	206	208	Right-handed 310
Helix 111	111	F	223	231	Right-handed alpha
Helix 112	112	F	272	285	Right-handed alpha
Helix 113	113	F	287	291	Right-handed 310
Helix 114	114	F	300	311	Right-handed alpha
Helix 115	115	F	318	332	Right-handed alpha
Helix 116	116	F	338	342	Right-handed 310
Helix 117	117	F	348	353	Right-handed alpha
Helix 118	118	F	360	373	Right-handed alpha
Helix 119	119	F	376	380	Right-handed 310

There are 15 sheets in PDB entry 5AB7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, CB, CC, A, DB, EA, EB, EC, FA, FB,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	13	first strand
Strand 2	A	213	222	anti-parallel
Strand 3	A	108	116	anti-parallel
Strand 4	A	47	50	parallel
Strand 5	A	79	84	parallel
Strand 6	B	79	84	anti-parallel
Strand 7	B	47	50	parallel
Strand 8	B	108	116	parallel
Strand 9	B	213	222	anti-parallel
Strand 10	B	6	13	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	203	204	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	254	first strand
Strand 2	A	399	406	anti-parallel
Strand 3	A	387	394	anti-parallel
Strand 4	A	293	296	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	203	204	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	254	first strand
Strand 2	B	399	406	anti-parallel
Strand 3	B	387	394	anti-parallel
Strand 4	B	293	296	parallel

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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	13	first strand
Strand 2	C	213	222	anti-parallel
Strand 3	C	108	116	anti-parallel
Strand 4	C	47	50	parallel
Strand 5	C	79	84	parallel
Strand 6	D	79	84	anti-parallel
Strand 7	D	47	50	parallel
Strand 8	D	108	116	parallel
Strand 9	D	213	222	anti-parallel
Strand 10	D	6	13	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	200	first strand
Strand 2	C	203	204	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	254	first strand
Strand 2	C	399	406	anti-parallel
Strand 3	C	387	394	anti-parallel
Strand 4	C	293	296	parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	203	204	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	254	first strand
Strand 2	D	399	406	anti-parallel
Strand 3	D	387	394	anti-parallel
Strand 4	D	293	296	parallel

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There are 10 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	13	first strand
Strand 2	E	213	222	anti-parallel
Strand 3	E	108	116	anti-parallel
Strand 4	E	47	50	parallel
Strand 5	E	79	84	parallel
Strand 6	F	79	84	anti-parallel
Strand 7	F	47	50	parallel
Strand 8	F	108	116	parallel
Strand 9	F	213	222	anti-parallel
Strand 10	F	6	13	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	203	204	anti-parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	254	first strand
Strand 2	E	399	406	anti-parallel
Strand 3	E	387	394	anti-parallel
Strand 4	E	293	296	parallel

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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	200	first strand
Strand 2	F	203	204	anti-parallel

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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	246	254	first strand
Strand 2	F	399	406	anti-parallel
Strand 3	F	387	394	anti-parallel
Strand 4	F	293	296	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5AB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5AB7