Analysis of interatomic Contacts of Structural Units in PDB entry:
5ABF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ABF entry

There is 1 chain in PDB entry 5ABF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ILE 638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5ABF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 46Right-handed alpha
Helix 2
2
A
64 71Right-handed 310
Helix 3
3
A
96 111Right-handed alpha
Helix 4
4
A
142 156Right-handed alpha
Helix 5
5
A
174 178Right-handed 310
Helix 6
6
A
181 198Right-handed alpha
Helix 7
7
A
215 232Right-handed alpha
Helix 8
8
A
246 249Right-handed 310
Helix 9
9
A
250 265Right-handed alpha
Helix 10
10
A
292 301Right-handed alpha
Helix 11
11
A
319 331Right-handed alpha
Helix 12
12
A
362 364Right-handed 310
Helix 13
13
A
380 393Right-handed alpha
Helix 14
14
A
394 397Right-handed 310
Helix 15
15
A
398 411Right-handed alpha
Helix 16
16
A
414 424Right-handed alpha
Helix 17
17
A
443 457Right-handed alpha
Helix 18
18
A
461 484Right-handed alpha
Helix 19
19
A
488 518Right-handed alpha
Helix 20
20
A
520 545Right-handed alpha
Helix 21
21
A
560 580Right-handed alpha
Helix 22
22
B
34 45Right-handed alpha
Helix 23
23
B
64 71Right-handed 310
Helix 24
24
B
96 111Right-handed alpha
Helix 25
25
B
142 156Right-handed alpha
Helix 26
26
B
174 178Right-handed 310
Helix 27
27
B
181 198Right-handed alpha
Helix 28
28
B
215 232Right-handed alpha
Helix 29
29
B
246 249Right-handed 310
Helix 30
30
B
250 265Right-handed alpha
Helix 31
31
B
292 301Right-handed alpha
Helix 32
32
B
319 331Right-handed alpha
Helix 33
33
B
362 364Right-handed 310
Helix 34
34
B
380 393Right-handed alpha
Helix 35
35
B
394 397Right-handed 310
Helix 36
36
B
398 411Right-handed alpha
Helix 37
37
B
414 424Right-handed alpha
Helix 38
38
B
443 456Right-handed alpha
Helix 39
39
B
461 484Right-handed alpha
Helix 40
40
B
488 518Right-handed alpha
Helix 41
41
B
520 545Right-handed alpha
Helix 42
42
B
560 580Right-handed alpha
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There are 12 sheets in PDB entry 5ABF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 20first strand
Strand 2
A
115 123anti-parallel
Strand 3
A
81 85anti-parallel
Strand 4
A
89 94anti-parallel
Strand 5
A
55 61parallel
Strand 6
A
24 28parallel
Strand 7
A
49 50parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
366 371parallel
Strand 3
A
334 338parallel
Strand 4
A
306 309parallel
Strand 5
A
275 278parallel
Strand 6
A
236 240parallel
Strand 7
A
201 206parallel
Strand 8
A
160 163parallel
Strand 9
A
129 134parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
632 662anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 610first strand
Strand 2
A
613 616anti-parallel
Strand 3
A
688 713anti-parallel
Strand 4
A
632 662anti-parallel
Strand 5
A
669 670parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 610first strand
Strand 2
A
613 616anti-parallel
Strand 3
A
688 713anti-parallel
Strand 4
A
632 662anti-parallel
Strand 5
A
682 683parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 670first strand
Strand 2
A
632 662parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 610first strand
Strand 2
A
613 616anti-parallel
Strand 3
A
688 713anti-parallel
Strand 4
A
632 662anti-parallel
Strand 5
A
594 596anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 20first strand
Strand 2
B
115 123anti-parallel
Strand 3
B
81 85anti-parallel
Strand 4
B
89 94anti-parallel
Strand 5
B
55 61parallel
Strand 6
B
25 28parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 134first strand
Strand 2
B
366 371parallel
Strand 3
B
334 338parallel
Strand 4
B
306 309parallel
Strand 5
B
275 278parallel
Strand 6
B
236 240parallel
Strand 7
B
201 206parallel
Strand 8
B
160 163parallel
Strand 9
B
129 134parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
607 610first strand
Strand 2
B
613 616anti-parallel
Strand 3
B
709 713anti-parallel
Strand 4
B
632 646anti-parallel
Strand 5
B
681 683anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
607 610first strand
Strand 2
B
613 616anti-parallel
Strand 3
B
709 713anti-parallel
Strand 4
B
632 646anti-parallel
Strand 5
B
688 693anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
681 683first strand
Strand 2
B
632 646anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il