Analysis of interatomic Contacts of Structural Units in PDB entry:
5ABV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ABV entry

There are 8 chains in PDB entry 5ABV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 67LEU 248
B
 VAL 579ALA 638
C
 HIS 67LEU 248
D
 SER 577ALA 637
E
 HIS 67LEU 248
F
 SER 577LYS 635
G
 HIS 67LEU 248
H
 ARG 578THR 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5ABV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
102 111Right-handed alpha
Helix 2
2
A
155 170Right-handed alpha
Helix 3
3
A
204 218Right-handed alpha
Helix 4
4
B
583 590Right-handed alpha
Helix 5
5
B
602 608Right-handed alpha
Helix 6
6
B
627 637Right-handed alpha
Helix 7
7
C
102 111Right-handed alpha
Helix 8
8
C
155 171Right-handed alpha
Helix 9
9
C
204 218Right-handed alpha
Helix 10
10
C
231 234Right-handed alpha
Helix 11
11
D
583 590Right-handed alpha
Helix 12
12
D
602 608Right-handed alpha
Helix 13
13
D
627 636Right-handed alpha
Helix 14
14
E
102 111Right-handed alpha
Helix 15
15
E
155 171Right-handed alpha
Helix 16
16
E
204 218Right-handed alpha
Helix 17
17
E
231 234Right-handed alpha
Helix 18
18
F
583 590Right-handed alpha
Helix 19
19
F
602 608Right-handed alpha
Helix 20
20
F
627 634Right-handed alpha
Helix 21
21
G
102 111Right-handed alpha
Helix 22
22
G
155 170Right-handed alpha
Helix 23
23
G
204 217Right-handed alpha
Helix 24
24
H
583 590Right-handed alpha
Helix 25
25
H
602 608Right-handed alpha
Helix 26
26
H
627 634Right-handed alpha
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There are 4 sheets in PDB entry 5ABV. Click on sheet of interest to get list of strands forming it: AA, CA, EA, GA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 101first strand
Strand 2
A
71 81anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
180 186anti-parallel
Strand 5
A
192 198anti-parallel
Strand 6
A
144 150anti-parallel
Strand 7
A
226 230anti-parallel
Strand 8
A
246 247anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 101first strand
Strand 2
C
71 81anti-parallel
Strand 3
C
123 128anti-parallel
Strand 4
C
180 186anti-parallel
Strand 5
C
192 198anti-parallel
Strand 6
C
144 150anti-parallel
Strand 7
C
226 230anti-parallel
Strand 8
C
246 247anti-parallel
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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
93 101first strand
Strand 2
E
71 81anti-parallel
Strand 3
E
122 128anti-parallel
Strand 4
E
180 187anti-parallel
Strand 5
E
192 198anti-parallel
Strand 6
E
144 150anti-parallel
Strand 7
E
226 230anti-parallel
Strand 8
E
246 247anti-parallel
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There are 8 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
93 101first strand
Strand 2
G
71 81anti-parallel
Strand 3
G
123 128anti-parallel
Strand 4
G
180 186anti-parallel
Strand 5
G
192 198anti-parallel
Strand 6
G
144 150anti-parallel
Strand 7
G
227 230anti-parallel
Strand 8
G
246 247anti-parallel
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