Analysis of interatomic Contacts of Structural Units in PDB entry:
5ADP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ADP entry

There are 2 chains in PDB entry 5ADP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 VAL 2LEU 223
L
 SER 2ASP 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5ADP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
28 32Right-handed 310
Helix 2
2
H
64 66Right-handed 310
Helix 3
3
H
87 91Right-handed 310
Helix 4
4
H
162 164Right-handed 310
Helix 5
5
H
193 195Right-handed 310
Helix 6
6
H
207 210Right-handed 310
Helix 7
7
L
123 128Right-handed alpha
Helix 8
8
L
185 189Right-handed alpha
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There are 17 sheets in PDB entry 5ADP. Click on sheet of interest to get list of strands forming it: HA, HB, HC, HD, HE, HF, HG, HH, HI, HJ, HK, LA, LB, LC, LD, LE, LF,

There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
72 73parallel
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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 69anti-parallel
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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
72 73first strand
Strand 2
H
78 83parallel
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There are 4 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
108 109anti-parallel
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There are 6 strands in HE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
113 117parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
34 40anti-parallel
Strand 5
H
47 53anti-parallel
Strand 6
H
58 60anti-parallel
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There are 2 strands in HF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
108 109first strand
Strand 2
H
92 99anti-parallel
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There are 4 strands in HG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
126 130first strand
Strand 2
H
141 151anti-parallel
Strand 3
H
182 191anti-parallel
Strand 4
H
175 176parallel
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There are 4 strands in HH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
126 130first strand
Strand 2
H
141 151anti-parallel
Strand 3
H
182 191anti-parallel
Strand 4
H
169 171anti-parallel
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There are 2 strands in HI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
175 176first strand
Strand 2
H
182 191parallel
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There are 3 strands in HJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
157 160first strand
Strand 2
H
201 206anti-parallel
Strand 3
H
211 216anti-parallel
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There are 2 strands in HK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
221 222first strand
Strand 2
L
216 217anti-parallel
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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
104 108parallel
Strand 3
L
86 92anti-parallel
Strand 4
L
98 100parallel
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There are 5 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
104 108parallel
Strand 3
L
86 92anti-parallel
Strand 4
L
35 39anti-parallel
Strand 5
L
46 49anti-parallel
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There are 2 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
98 100first strand
Strand 2
L
86 92parallel
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There are 3 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
71 76anti-parallel
Strand 3
L
63 68anti-parallel
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There are 4 strands in LE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
116 120first strand
Strand 2
L
131 141anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
161 165anti-parallel
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There are 4 strands in LF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
155 156first strand
Strand 2
L
146 152anti-parallel
Strand 3
L
193 200anti-parallel
Strand 4
L
207 212anti-parallel
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