Analysis of interatomic Contacts of Structural Units in PDB entry:
5AE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AE5 entry

There are 2 chains in PDB entry 5AE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 303
B
 ASP 5GLU 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5AE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 6Right-handed alpha
Helix 2
2
A
8 14Right-handed alpha
Helix 3
3
A
22 29Right-handed alpha
Helix 4
4
A
33 48Right-handed alpha
Helix 5
5
A
63 82Right-handed alpha
Helix 6
6
A
83 85Right-handed 310
Helix 7
7
A
104 123Right-handed alpha
Helix 8
8
A
137 144Right-handed alpha
Helix 9
9
A
187 194Right-handed alpha
Helix 10
10
A
204 207Right-handed 310
Helix 11
11
A
208 215Right-handed alpha
Helix 12
12
A
231 239Right-handed alpha
Helix 13
13
A
247 258Right-handed alpha
Helix 14
14
A
280 282Right-handed 310
Helix 15
15
A
284 299Right-handed alpha
Helix 16
16
B
8 20Right-handed alpha
Helix 17
17
B
26 31Right-handed alpha
Helix 18
18
B
33 49Right-handed alpha
Helix 19
19
B
65 85Right-handed alpha
Helix 20
20
B
104 123Right-handed alpha
Helix 21
21
B
137 144Right-handed alpha
Helix 22
22
B
187 194Right-handed alpha
Helix 23
23
B
204 207Right-handed 310
Helix 24
24
B
208 216Right-handed alpha
Helix 25
25
B
231 239Right-handed alpha
Helix 26
26
B
247 258Right-handed alpha
Helix 27
27
B
280 282Right-handed 310
Helix 28
28
B
284 299Right-handed alpha
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There are 3 sheets in PDB entry 5AE5. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 169first strand
Strand 2
A
271 278anti-parallel
Strand 3
A
149 152anti-parallel
Strand 4
A
98 102parallel
Strand 5
A
127 131parallel
Strand 6
B
221 226parallel
Strand 7
B
195 199parallel
Strand 8
B
242 246parallel
Strand 9
B
171 176anti-parallel
Strand 10
B
259 263anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
171 176anti-parallel
Strand 3
A
259 263anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 199first strand
Strand 2
A
221 226parallel
Strand 3
B
127 131parallel
Strand 4
B
98 102parallel
Strand 5
B
149 152parallel
Strand 6
B
271 278anti-parallel
Strand 7
B
161 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il