Analysis of interatomic Contacts of Structural Units in PDB entry:
5AEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AEB entry

There are 2 chains in PDB entry 5AEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 28ASN 306
B
 GLN 26ASN 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5AEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 39Right-handed 310
Helix 2
2
A
87 90Right-handed 310
Helix 3
3
A
91 102Right-handed alpha
Helix 4
4
A
105 107Right-handed 310
Helix 5
5
A
118 123Right-handed alpha
Helix 6
6
A
124 133Right-handed alpha
Helix 7
7
A
142 148Right-handed alpha
Helix 8
8
A
229 233Right-handed 310
Helix 9
9
A
238 252Right-handed alpha
Helix 10
10
A
264 267Right-handed 310
Helix 11
11
A
268 273Right-handed alpha
Helix 12
12
A
280 285Right-handed 310
Helix 13
13
A
286 304Right-handed alpha
Helix 14
14
B
35 39Right-handed 310
Helix 15
15
B
87 90Right-handed 310
Helix 16
16
B
91 102Right-handed alpha
Helix 17
17
B
105 107Right-handed 310
Helix 18
18
B
118 123Right-handed alpha
Helix 19
19
B
124 133Right-handed alpha
Helix 20
20
B
142 148Right-handed alpha
Helix 21
21
B
229 233Right-handed 310
Helix 22
22
B
238 252Right-handed alpha
Helix 23
23
B
264 267Right-handed 310
Helix 24
24
B
268 273Right-handed alpha
Helix 25
25
B
280 285Right-handed 310
Helix 26
26
B
286 304Right-handed alpha
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There are 4 sheets in PDB entry 5AEB. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
52 54anti-parallel
Strand 3
A
71 75anti-parallel
Strand 4
A
79 83anti-parallel
Strand 5
A
109 113parallel
Strand 6
A
135 139parallel
Strand 7
A
172 174parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
185 191anti-parallel
Strand 3
A
201 208anti-parallel
Strand 4
A
213 219anti-parallel
Strand 5
A
258 261parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
52 54anti-parallel
Strand 3
B
71 75anti-parallel
Strand 4
B
79 83anti-parallel
Strand 5
B
109 113parallel
Strand 6
B
135 139parallel
Strand 7
B
172 174parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 182first strand
Strand 2
B
185 191anti-parallel
Strand 3
B
201 208anti-parallel
Strand 4
B
213 219anti-parallel
Strand 5
B
258 261parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il