Analysis of interatomic Contacts of Structural Units in PDB entry:
5AED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5AED entry

There are 2 chains in PDB entry 5AED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8HIS 681
B
 LEU 8ILE 678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 5AED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 54Right-handed 310
Helix 2
2
A
161 172Right-handed alpha
Helix 3
3
A
231 244Right-handed alpha
Helix 4
4
A
250 256Right-handed 310
Helix 5
5
A
264 278Right-handed alpha
Helix 6
6
A
288 291Right-handed 310
Helix 7
7
A
315 326Right-handed alpha
Helix 8
8
A
342 351Right-handed alpha
Helix 9
9
A
379 394Right-handed alpha
Helix 10
10
A
421 444Right-handed alpha
Helix 11
11
A
460 465Right-handed alpha
Helix 12
12
A
482 484Right-handed 310
Helix 13
13
A
485 495Right-handed alpha
Helix 14
14
A
517 529Right-handed alpha
Helix 15
15
A
541 545Right-handed 310
Helix 16
16
A
551 568Right-handed alpha
Helix 17
17
A
568 583Right-handed alpha
Helix 18
18
A
589 593Right-handed 310
Helix 19
19
A
597 603Right-handed 310
Helix 20
20
A
668 680Right-handed alpha
Helix 21
21
B
50 54Right-handed 310
Helix 22
22
B
161 172Right-handed alpha
Helix 23
23
B
231 244Right-handed alpha
Helix 24
24
B
250 255Right-handed 310
Helix 25
25
B
264 278Right-handed alpha
Helix 26
26
B
288 291Right-handed 310
Helix 27
27
B
315 326Right-handed alpha
Helix 28
28
B
342 352Right-handed alpha
Helix 29
29
B
379 394Right-handed alpha
Helix 30
30
B
421 444Right-handed alpha
Helix 31
31
B
460 465Right-handed alpha
Helix 32
32
B
482 484Right-handed 310
Helix 33
33
B
485 495Right-handed alpha
Helix 34
34
B
517 529Right-handed alpha
Helix 35
35
B
541 545Right-handed 310
Helix 36
36
B
551 568Right-handed alpha
Helix 37
37
B
568 583Right-handed alpha
Helix 38
38
B
589 593Right-handed 310
Helix 39
39
B
597 603Right-handed 310
Helix 40
40
B
668 675Right-handed alpha
Helix 41
41
B
676 678Right-handed 310
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There are 19 sheets in PDB entry 5AED. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, BA, BB, BC, BD, BE, BF, BG, BH, BI,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
27 32anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 66first strand
Strand 2
A
39 49anti-parallel
Strand 3
A
116 122anti-parallel
Strand 4
A
212 217anti-parallel
Strand 5
A
203 206anti-parallel
Strand 6
A
145 148anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
103 109anti-parallel
Strand 5
A
221 228anti-parallel
Strand 6
A
193 197anti-parallel
Strand 7
A
183 189anti-parallel
Strand 8
A
129 133anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 260first strand
Strand 2
A
282 286parallel
Strand 3
A
329 334parallel
Strand 4
A
401 404parallel
Strand 5
A
451 454parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
299 302anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
371 374anti-parallel
Strand 3
A
364 366anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
501 502parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 505first strand
Strand 2
A
535 536parallel
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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 588first strand
Strand 2
A
607 609anti-parallel
Strand 3
A
613 615anti-parallel
Strand 4
A
660 663anti-parallel
Strand 5
A
635 637anti-parallel
Strand 6
A
643 644anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 630first strand
Strand 2
A
647 652anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 14first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
27 32anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 66first strand
Strand 2
B
39 49anti-parallel
Strand 3
B
116 122anti-parallel
Strand 4
B
212 217anti-parallel
Strand 5
B
203 206anti-parallel
Strand 6
B
145 148anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
78 85anti-parallel
Strand 3
B
89 97anti-parallel
Strand 4
B
103 109anti-parallel
Strand 5
B
221 228anti-parallel
Strand 6
B
193 197anti-parallel
Strand 7
B
183 189anti-parallel
Strand 8
B
129 133anti-parallel
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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
451 453first strand
Strand 2
B
401 404parallel
Strand 3
B
329 334parallel
Strand 4
B
282 286parallel
Strand 5
B
257 260parallel
Strand 6
B
534 536parallel
Strand 7
B
504 505parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
300 302anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
370 374anti-parallel
Strand 3
B
364 367anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 469first strand
Strand 2
B
501 502parallel
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There are 6 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 588first strand
Strand 2
B
607 609anti-parallel
Strand 3
B
613 615anti-parallel
Strand 4
B
660 663anti-parallel
Strand 5
B
635 637anti-parallel
Strand 6
B
643 644anti-parallel
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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
625 630first strand
Strand 2
B
647 652anti-parallel
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